Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2720

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2719 and Psest_2720 are separated by 141 nucleotidesPsest_2720 and Psest_2721 are separated by 127 nucleotides Psest_2719: Psest_2719 - acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family, at 2,907,730 to 2,908,950 _2719 Psest_2720: Psest_2720 - Enoyl-CoA hydratase/carnithine racemase, at 2,909,092 to 2,909,781 _2720 Psest_2721: Psest_2721 - HD-GYP domain, at 2,909,909 to 2,911,198 _2721 Position (kb) 2909 2910Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2908.230 kb on - strand, within Psest_2719at 2908.329 kb on - strand, within Psest_2719at 2908.482 kb on - strand, within Psest_2719at 2908.572 kb on - strand, within Psest_2719at 2908.709 kb on + strand, within Psest_2719at 2908.709 kb on + strand, within Psest_2719at 2908.709 kb on + strand, within Psest_2719at 2908.709 kb on + strand, within Psest_2719at 2908.709 kb on + strand, within Psest_2719at 2908.709 kb on + strand, within Psest_2719at 2908.710 kb on - strand, within Psest_2719at 2908.710 kb on - strand, within Psest_2719at 2908.710 kb on - strand, within Psest_2719at 2908.710 kb on - strand, within Psest_2719at 2908.710 kb on - strand, within Psest_2719at 2909.027 kb on + strandat 2909.028 kb on - strandat 2909.187 kb on + strand, within Psest_2720at 2909.188 kb on - strand, within Psest_2720at 2909.188 kb on - strand, within Psest_2720at 2909.251 kb on + strand, within Psest_2720at 2909.251 kb on + strand, within Psest_2720at 2909.252 kb on - strand, within Psest_2720at 2909.252 kb on - strand, within Psest_2720at 2909.693 kb on - strand, within Psest_2720at 2909.763 kb on - strandat 2909.763 kb on - strandat 2909.977 kb on + strandat 2910.366 kb on + strand, within Psest_2721at 2910.366 kb on + strand, within Psest_2721at 2910.366 kb on + strand, within Psest_2721at 2910.366 kb on + strand, within Psest_2721at 2910.367 kb on - strand, within Psest_2721at 2910.432 kb on + strand, within Psest_2721at 2910.694 kb on + strand, within Psest_2721at 2910.694 kb on + strand, within Psest_2721at 2910.695 kb on - strand, within Psest_2721at 2910.696 kb on + strand, within Psest_2721at 2910.696 kb on + strand, within Psest_2721at 2910.696 kb on + strand, within Psest_2721at 2910.696 kb on + strand, within Psest_2721at 2910.696 kb on + strand, within Psest_2721at 2910.696 kb on + strand, within Psest_2721at 2910.697 kb on - strand, within Psest_2721at 2910.697 kb on - strand, within Psest_2721at 2910.697 kb on - strand, within Psest_2721at 2910.697 kb on - strand, within Psest_2721

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,908,230 - Psest_2719 0.41 +0.3
2,908,329 - Psest_2719 0.49 +2.0
2,908,482 - Psest_2719 0.62 +0.7
2,908,572 - Psest_2719 0.69 -0.3
2,908,709 + Psest_2719 0.80 +1.0
2,908,709 + Psest_2719 0.80 +0.4
2,908,709 + Psest_2719 0.80 +1.0
2,908,709 + Psest_2719 0.80 +2.0
2,908,709 + Psest_2719 0.80 +1.0
2,908,709 + Psest_2719 0.80 +3.0
2,908,710 - Psest_2719 0.80 +2.0
2,908,710 - Psest_2719 0.80 +2.0
2,908,710 - Psest_2719 0.80 +2.0
2,908,710 - Psest_2719 0.80 +0.7
2,908,710 - Psest_2719 0.80 +1.0
2,909,027 + +0.1
2,909,028 - -1.9
2,909,187 + Psest_2720 0.14 +0.6
2,909,188 - Psest_2720 0.14 -0.6
2,909,188 - Psest_2720 0.14 +0.7
2,909,251 + Psest_2720 0.23 +0.2
2,909,251 + Psest_2720 0.23 -1.3
2,909,252 - Psest_2720 0.23 +0.5
2,909,252 - Psest_2720 0.23 -1.0
2,909,693 - Psest_2720 0.87 +0.5
2,909,763 - -0.9
2,909,763 - +0.4
2,909,977 + +0.4
2,910,366 + Psest_2721 0.35 -0.5
2,910,366 + Psest_2721 0.35 +0.3
2,910,366 + Psest_2721 0.35 +0.6
2,910,366 + Psest_2721 0.35 -0.0
2,910,367 - Psest_2721 0.36 +0.3
2,910,432 + Psest_2721 0.41 +0.1
2,910,694 + Psest_2721 0.61 +1.1
2,910,694 + Psest_2721 0.61 +0.2
2,910,695 - Psest_2721 0.61 +1.6
2,910,696 + Psest_2721 0.61 -0.7
2,910,696 + Psest_2721 0.61 -0.1
2,910,696 + Psest_2721 0.61 -0.4
2,910,696 + Psest_2721 0.61 +0.2
2,910,696 + Psest_2721 0.61 -0.2
2,910,696 + Psest_2721 0.61 -0.2
2,910,697 - Psest_2721 0.61 -0.2
2,910,697 - Psest_2721 0.61 +0.1
2,910,697 - Psest_2721 0.61 +0.4
2,910,697 - Psest_2721 0.61 +0.2

Or see this region's nucleotide sequence