Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3866

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3864 and Psest_3865 are separated by 33 nucleotidesPsest_3865 and Psest_3866 are separated by 20 nucleotidesPsest_3866 and Psest_3867 are separated by 164 nucleotidesPsest_3867 and Psest_3868 are separated by 98 nucleotides Psest_3864: Psest_3864 - Histidinol-phosphatase (EC:3.1.3.15) (from data), at 4,036,172 to 4,036,825 _3864 Psest_3865: Psest_3865 - Predicted integral membrane protein (DUF2269)., at 4,036,859 to 4,037,287 _3865 Psest_3866: Psest_3866 - threonine ammonia-lyase, biosynthetic, long form, at 4,037,308 to 4,038,822 _3866 Psest_3867: Psest_3867 - ribose 5-phosphate isomerase, at 4,038,987 to 4,039,658 _3867 Psest_3868: Psest_3868 - Uncharacterized conserved protein, at 4,039,757 to 4,040,104 _3868 Position (kb) 4037 4038 4039Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 4036.310 kb on + strand, within Psest_3864at 4036.310 kb on + strand, within Psest_3864at 4036.310 kb on + strand, within Psest_3864at 4036.310 kb on + strand, within Psest_3864at 4036.311 kb on - strand, within Psest_3864at 4036.596 kb on - strand, within Psest_3864at 4036.694 kb on + strand, within Psest_3864at 4036.694 kb on + strand, within Psest_3864at 4036.694 kb on + strand, within Psest_3864at 4036.694 kb on + strand, within Psest_3864at 4036.694 kb on + strand, within Psest_3864at 4036.694 kb on + strand, within Psest_3864at 4036.694 kb on + strand, within Psest_3864at 4036.694 kb on + strand, within Psest_3864at 4036.694 kb on + strand, within Psest_3864at 4036.694 kb on + strand, within Psest_3864at 4036.694 kb on + strand, within Psest_3864at 4036.694 kb on + strand, within Psest_3864at 4036.694 kb on + strand, within Psest_3864at 4036.695 kb on - strand, within Psest_3864at 4036.695 kb on - strand, within Psest_3864at 4036.695 kb on - strand, within Psest_3864at 4036.695 kb on - strand, within Psest_3864at 4036.695 kb on - strand, within Psest_3864at 4036.695 kb on - strand, within Psest_3864at 4036.695 kb on - strand, within Psest_3864at 4036.695 kb on - strand, within Psest_3864at 4036.695 kb on - strand, within Psest_3864at 4036.695 kb on - strand, within Psest_3864at 4036.695 kb on - strand, within Psest_3864at 4036.695 kb on - strand, within Psest_3864at 4036.700 kb on + strand, within Psest_3864at 4036.700 kb on + strand, within Psest_3864at 4036.700 kb on + strand, within Psest_3864at 4036.700 kb on + strand, within Psest_3864at 4036.700 kb on + strand, within Psest_3864at 4036.700 kb on + strand, within Psest_3864at 4036.700 kb on + strand, within Psest_3864at 4036.700 kb on + strand, within Psest_3864at 4036.700 kb on + strand, within Psest_3864at 4036.700 kb on + strand, within Psest_3864at 4036.701 kb on - strand, within Psest_3864at 4036.701 kb on - strand, within Psest_3864at 4036.701 kb on - strand, within Psest_3864at 4036.701 kb on - strand, within Psest_3864at 4036.923 kb on + strand, within Psest_3865at 4036.923 kb on + strand, within Psest_3865at 4036.924 kb on - strand, within Psest_3865at 4036.924 kb on - strand, within Psest_3865at 4036.924 kb on - strand, within Psest_3865at 4036.924 kb on - strand, within Psest_3865at 4036.928 kb on - strand, within Psest_3865at 4036.937 kb on - strand, within Psest_3865at 4036.937 kb on - strand, within Psest_3865at 4037.268 kb on - strandat 4037.268 kb on - strandat 4037.278 kb on - strandat 4037.278 kb on - strandat 4037.278 kb on - strandat 4037.278 kb on - strandat 4037.278 kb on - strandat 4037.299 kb on + strandat 4037.299 kb on + strandat 4037.299 kb on + strandat 4037.300 kb on - strandat 4037.300 kb on - strandat 4037.300 kb on - strandat 4037.327 kb on + strandat 4037.327 kb on + strandat 4037.327 kb on + strandat 4037.328 kb on - strandat 4037.328 kb on - strandat 4037.328 kb on - strandat 4037.428 kb on + strandat 4037.742 kb on - strand, within Psest_3866at 4037.957 kb on + strand, within Psest_3866at 4037.957 kb on + strand, within Psest_3866at 4037.957 kb on + strand, within Psest_3866at 4037.957 kb on + strand, within Psest_3866at 4037.957 kb on + strand, within Psest_3866at 4037.958 kb on - strand, within Psest_3866at 4037.958 kb on - strand, within Psest_3866at 4038.020 kb on + strand, within Psest_3866at 4038.020 kb on + strand, within Psest_3866at 4038.020 kb on + strand, within Psest_3866at 4038.020 kb on + strand, within Psest_3866at 4038.021 kb on - strand, within Psest_3866at 4038.024 kb on + strand, within Psest_3866at 4038.024 kb on + strand, within Psest_3866at 4038.024 kb on + strand, within Psest_3866at 4038.024 kb on + strand, within Psest_3866at 4038.025 kb on - strand, within Psest_3866at 4038.025 kb on - strand, within Psest_3866at 4038.025 kb on - strand, within Psest_3866at 4038.080 kb on + strand, within Psest_3866at 4038.080 kb on + strand, within Psest_3866at 4038.080 kb on + strand, within Psest_3866at 4038.080 kb on + strand, within Psest_3866at 4038.081 kb on - strand, within Psest_3866at 4038.081 kb on - strand, within Psest_3866at 4038.248 kb on + strand, within Psest_3866at 4038.248 kb on + strand, within Psest_3866at 4038.248 kb on + strand, within Psest_3866at 4038.248 kb on + strand, within Psest_3866at 4038.249 kb on - strand, within Psest_3866at 4038.249 kb on - strand, within Psest_3866at 4038.249 kb on - strand, within Psest_3866at 4038.249 kb on - strand, within Psest_3866at 4038.249 kb on - strand, within Psest_3866at 4038.249 kb on - strand, within Psest_3866at 4038.249 kb on - strand, within Psest_3866at 4038.249 kb on - strand, within Psest_3866at 4038.249 kb on - strand, within Psest_3866at 4038.249 kb on - strand, within Psest_3866at 4038.249 kb on - strand, within Psest_3866at 4038.257 kb on + strand, within Psest_3866at 4038.396 kb on + strand, within Psest_3866at 4038.397 kb on - strand, within Psest_3866at 4038.397 kb on - strand, within Psest_3866at 4038.398 kb on + strand, within Psest_3866at 4038.398 kb on + strand, within Psest_3866at 4038.398 kb on + strand, within Psest_3866at 4038.398 kb on + strand, within Psest_3866at 4038.398 kb on + strand, within Psest_3866at 4038.398 kb on + strand, within Psest_3866at 4038.398 kb on + strand, within Psest_3866at 4038.398 kb on + strand, within Psest_3866at 4038.398 kb on + strand, within Psest_3866at 4038.399 kb on - strand, within Psest_3866at 4038.399 kb on - strand, within Psest_3866at 4038.399 kb on - strand, within Psest_3866at 4038.399 kb on - strand, within Psest_3866at 4038.399 kb on - strand, within Psest_3866at 4038.399 kb on - strand, within Psest_3866at 4038.399 kb on - strand, within Psest_3866at 4038.399 kb on - strand, within Psest_3866at 4038.399 kb on - strand, within Psest_3866at 4038.399 kb on - strand, within Psest_3866at 4038.399 kb on - strand, within Psest_3866at 4038.404 kb on + strand, within Psest_3866at 4038.405 kb on - strand, within Psest_3866at 4038.405 kb on - strand, within Psest_3866at 4038.405 kb on - strand, within Psest_3866at 4038.405 kb on - strand, within Psest_3866at 4038.657 kb on - strand, within Psest_3866at 4038.657 kb on - strand, within Psest_3866at 4038.657 kb on - strand, within Psest_3866at 4038.657 kb on - strand, within Psest_3866at 4038.779 kb on + strandat 4038.809 kb on + strandat 4038.809 kb on + strandat 4038.809 kb on + strandat 4038.810 kb on - strandat 4038.950 kb on - strandat 4038.950 kb on - strandat 4038.950 kb on - strandat 4038.951 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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4,036,310 + Psest_3864 0.21 -3.2
4,036,310 + Psest_3864 0.21 -1.4
4,036,310 + Psest_3864 0.21 -1.6
4,036,310 + Psest_3864 0.21 -2.4
4,036,311 - Psest_3864 0.21 +1.0
4,036,596 - Psest_3864 0.65 -3.0
4,036,694 + Psest_3864 0.80 -3.3
4,036,694 + Psest_3864 0.80 -2.1
4,036,694 + Psest_3864 0.80 -4.0
4,036,694 + Psest_3864 0.80 -2.4
4,036,694 + Psest_3864 0.80 -5.8
4,036,694 + Psest_3864 0.80 -5.1
4,036,694 + Psest_3864 0.80 -3.0
4,036,694 + Psest_3864 0.80 -3.5
4,036,694 + Psest_3864 0.80 -4.0
4,036,694 + Psest_3864 0.80 -2.1
4,036,694 + Psest_3864 0.80 -1.3
4,036,694 + Psest_3864 0.80 -4.1
4,036,694 + Psest_3864 0.80 -4.5
4,036,695 - Psest_3864 0.80 -3.4
4,036,695 - Psest_3864 0.80 -4.7
4,036,695 - Psest_3864 0.80 -2.4
4,036,695 - Psest_3864 0.80 -3.8
4,036,695 - Psest_3864 0.80 -2.0
4,036,695 - Psest_3864 0.80 -4.5
4,036,695 - Psest_3864 0.80 -2.9
4,036,695 - Psest_3864 0.80 -4.9
4,036,695 - Psest_3864 0.80 -3.0
4,036,695 - Psest_3864 0.80 -2.0
4,036,695 - Psest_3864 0.80 -2.1
4,036,695 - Psest_3864 0.80 -1.7
4,036,700 + Psest_3864 0.81 -5.0
4,036,700 + Psest_3864 0.81 -3.2
4,036,700 + Psest_3864 0.81 -2.9
4,036,700 + Psest_3864 0.81 -3.6
4,036,700 + Psest_3864 0.81 -4.2
4,036,700 + Psest_3864 0.81 -4.7
4,036,700 + Psest_3864 0.81 -3.4
4,036,700 + Psest_3864 0.81 -2.5
4,036,700 + Psest_3864 0.81 -4.6
4,036,700 + Psest_3864 0.81 -4.1
4,036,701 - Psest_3864 0.81 -2.8
4,036,701 - Psest_3864 0.81 -3.6
4,036,701 - Psest_3864 0.81 -1.4
4,036,701 - Psest_3864 0.81 -5.3
4,036,923 + Psest_3865 0.15 +1.1
4,036,923 + Psest_3865 0.15 -1.7
4,036,924 - Psest_3865 0.15 +0.2
4,036,924 - Psest_3865 0.15 -0.1
4,036,924 - Psest_3865 0.15 +0.6
4,036,924 - Psest_3865 0.15 +0.1
4,036,928 - Psest_3865 0.16 +0.3
4,036,937 - Psest_3865 0.18 -0.3
4,036,937 - Psest_3865 0.18 -0.8
4,037,268 - +0.5
4,037,268 - +0.9
4,037,278 - -0.1
4,037,278 - -0.6
4,037,278 - +0.7
4,037,278 - -1.0
4,037,278 - +0.1
4,037,299 + +0.2
4,037,299 + -0.1
4,037,299 + +1.9
4,037,300 - +0.5
4,037,300 - +0.4
4,037,300 - -0.4
4,037,327 + -2.6
4,037,327 + -2.4
4,037,327 + +0.1
4,037,328 - -4.6
4,037,328 - -2.9
4,037,328 - -2.7
4,037,428 + -4.1
4,037,742 - Psest_3866 0.29 -4.2
4,037,957 + Psest_3866 0.43 -5.4
4,037,957 + Psest_3866 0.43 -4.0
4,037,957 + Psest_3866 0.43 -3.1
4,037,957 + Psest_3866 0.43 -2.6
4,037,957 + Psest_3866 0.43 -3.7
4,037,958 - Psest_3866 0.43 -4.0
4,037,958 - Psest_3866 0.43 -4.8
4,038,020 + Psest_3866 0.47 -3.6
4,038,020 + Psest_3866 0.47 -4.0
4,038,020 + Psest_3866 0.47 -2.5
4,038,020 + Psest_3866 0.47 -2.5
4,038,021 - Psest_3866 0.47 -0.6
4,038,024 + Psest_3866 0.47 -5.3
4,038,024 + Psest_3866 0.47 -3.9
4,038,024 + Psest_3866 0.47 -4.7
4,038,024 + Psest_3866 0.47 -5.1
4,038,025 - Psest_3866 0.47 -2.4
4,038,025 - Psest_3866 0.47 -3.0
4,038,025 - Psest_3866 0.47 -3.6
4,038,080 + Psest_3866 0.51 -4.5
4,038,080 + Psest_3866 0.51 -4.4
4,038,080 + Psest_3866 0.51 -2.8
4,038,080 + Psest_3866 0.51 -4.2
4,038,081 - Psest_3866 0.51 -3.9
4,038,081 - Psest_3866 0.51 -4.0
4,038,248 + Psest_3866 0.62 -1.1
4,038,248 + Psest_3866 0.62 -6.5
4,038,248 + Psest_3866 0.62 -4.4
4,038,248 + Psest_3866 0.62 -3.7
4,038,249 - Psest_3866 0.62 -3.6
4,038,249 - Psest_3866 0.62 -4.1
4,038,249 - Psest_3866 0.62 -4.9
4,038,249 - Psest_3866 0.62 -1.0
4,038,249 - Psest_3866 0.62 -3.0
4,038,249 - Psest_3866 0.62 -5.5
4,038,249 - Psest_3866 0.62 -4.6
4,038,249 - Psest_3866 0.62 -3.6
4,038,249 - Psest_3866 0.62 -3.1
4,038,249 - Psest_3866 0.62 -4.9
4,038,249 - Psest_3866 0.62 -4.5
4,038,257 + Psest_3866 0.63 -3.3
4,038,396 + Psest_3866 0.72 -2.7
4,038,397 - Psest_3866 0.72 -7.2
4,038,397 - Psest_3866 0.72 -2.8
4,038,398 + Psest_3866 0.72 -2.6
4,038,398 + Psest_3866 0.72 -4.3
4,038,398 + Psest_3866 0.72 -5.5
4,038,398 + Psest_3866 0.72 -2.9
4,038,398 + Psest_3866 0.72 -4.8
4,038,398 + Psest_3866 0.72 -4.6
4,038,398 + Psest_3866 0.72 -3.8
4,038,398 + Psest_3866 0.72 -3.4
4,038,398 + Psest_3866 0.72 -2.8
4,038,399 - Psest_3866 0.72 -3.0
4,038,399 - Psest_3866 0.72 -3.2
4,038,399 - Psest_3866 0.72 -2.7
4,038,399 - Psest_3866 0.72 -5.0
4,038,399 - Psest_3866 0.72 -4.3
4,038,399 - Psest_3866 0.72 -4.1
4,038,399 - Psest_3866 0.72 -3.6
4,038,399 - Psest_3866 0.72 -1.7
4,038,399 - Psest_3866 0.72 -3.8
4,038,399 - Psest_3866 0.72 -4.6
4,038,399 - Psest_3866 0.72 -4.8
4,038,404 + Psest_3866 0.72 -2.1
4,038,405 - Psest_3866 0.72 -2.4
4,038,405 - Psest_3866 0.72 -3.9
4,038,405 - Psest_3866 0.72 -2.6
4,038,405 - Psest_3866 0.72 -2.1
4,038,657 - Psest_3866 0.89 -4.1
4,038,657 - Psest_3866 0.89 -2.5
4,038,657 - Psest_3866 0.89 -2.5
4,038,657 - Psest_3866 0.89 -3.8
4,038,779 + -2.3
4,038,809 + -3.3
4,038,809 + -4.7
4,038,809 + -4.1
4,038,810 - -3.2
4,038,950 - -0.0
4,038,950 - +0.4
4,038,950 - -0.0
4,038,951 + -1.3

Or see this region's nucleotide sequence