Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3375

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3374 and Psest_3375 overlap by 4 nucleotidesPsest_3375 and Psest_3376 are separated by 53 nucleotides Psest_3374: Psest_3374 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 3,541,786 to 3,545,556 _3374 Psest_3375: Psest_3375 - prepilin-type N-terminal cleavage/methylation domain, at 3,545,553 to 3,545,999 _3375 Psest_3376: Psest_3376 - (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming), at 3,546,053 to 3,546,997 _3376 Position (kb) 3545 3546Strain fitness (log2 ratio) -3 -2 -1 0 1at 3544.841 kb on - strand, within Psest_3374at 3544.841 kb on - strand, within Psest_3374at 3544.841 kb on - strand, within Psest_3374at 3544.841 kb on - strand, within Psest_3374at 3544.888 kb on + strand, within Psest_3374at 3544.889 kb on - strand, within Psest_3374at 3544.939 kb on + strand, within Psest_3374at 3545.275 kb on + strandat 3545.317 kb on + strandat 3545.404 kb on - strandat 3545.670 kb on + strand, within Psest_3375at 3545.670 kb on + strand, within Psest_3375at 3545.670 kb on + strand, within Psest_3375at 3545.670 kb on + strand, within Psest_3375at 3545.670 kb on + strand, within Psest_3375at 3545.670 kb on + strand, within Psest_3375at 3545.670 kb on + strand, within Psest_3375at 3545.670 kb on + strand, within Psest_3375at 3545.671 kb on - strand, within Psest_3375at 3545.671 kb on - strand, within Psest_3375at 3545.742 kb on + strand, within Psest_3375at 3545.742 kb on + strand, within Psest_3375at 3545.742 kb on + strand, within Psest_3375at 3545.742 kb on + strand, within Psest_3375at 3545.760 kb on + strand, within Psest_3375at 3545.760 kb on + strand, within Psest_3375at 3545.760 kb on + strand, within Psest_3375at 3545.760 kb on + strand, within Psest_3375at 3545.764 kb on + strand, within Psest_3375at 3545.764 kb on + strand, within Psest_3375at 3545.832 kb on + strand, within Psest_3375at 3545.832 kb on + strand, within Psest_3375at 3545.833 kb on - strand, within Psest_3375at 3545.870 kb on + strand, within Psest_3375at 3545.870 kb on + strand, within Psest_3375at 3545.870 kb on + strand, within Psest_3375at 3545.870 kb on + strand, within Psest_3375at 3545.870 kb on + strand, within Psest_3375at 3545.870 kb on + strand, within Psest_3375at 3545.870 kb on + strand, within Psest_3375at 3545.871 kb on - strand, within Psest_3375at 3545.871 kb on - strand, within Psest_3375at 3545.871 kb on - strand, within Psest_3375at 3545.874 kb on + strand, within Psest_3375at 3545.875 kb on - strand, within Psest_3375at 3545.875 kb on - strand, within Psest_3375at 3545.875 kb on - strand, within Psest_3375at 3545.875 kb on - strand, within Psest_3375at 3545.875 kb on - strand, within Psest_3375

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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3,544,841 - Psest_3374 0.81 -1.7
3,544,841 - Psest_3374 0.81 +0.2
3,544,841 - Psest_3374 0.81 -2.3
3,544,841 - Psest_3374 0.81 -1.3
3,544,888 + Psest_3374 0.82 -0.5
3,544,889 - Psest_3374 0.82 -0.3
3,544,939 + Psest_3374 0.84 -0.8
3,545,275 + -0.8
3,545,317 + -0.9
3,545,404 - +0.7
3,545,670 + Psest_3375 0.26 -2.7
3,545,670 + Psest_3375 0.26 -1.8
3,545,670 + Psest_3375 0.26 -3.2
3,545,670 + Psest_3375 0.26 -1.1
3,545,670 + Psest_3375 0.26 -2.4
3,545,670 + Psest_3375 0.26 -2.5
3,545,670 + Psest_3375 0.26 -2.0
3,545,670 + Psest_3375 0.26 -0.5
3,545,671 - Psest_3375 0.26 -1.7
3,545,671 - Psest_3375 0.26 -1.9
3,545,742 + Psest_3375 0.42 -2.3
3,545,742 + Psest_3375 0.42 -1.0
3,545,742 + Psest_3375 0.42 -0.8
3,545,742 + Psest_3375 0.42 -1.9
3,545,760 + Psest_3375 0.46 -2.0
3,545,760 + Psest_3375 0.46 -2.2
3,545,760 + Psest_3375 0.46 -0.6
3,545,760 + Psest_3375 0.46 +1.0
3,545,764 + Psest_3375 0.47 -1.2
3,545,764 + Psest_3375 0.47 -0.9
3,545,832 + Psest_3375 0.62 +0.6
3,545,832 + Psest_3375 0.62 -2.3
3,545,833 - Psest_3375 0.63 -2.2
3,545,870 + Psest_3375 0.71 -1.6
3,545,870 + Psest_3375 0.71 -1.6
3,545,870 + Psest_3375 0.71 -0.7
3,545,870 + Psest_3375 0.71 -3.1
3,545,870 + Psest_3375 0.71 -0.6
3,545,870 + Psest_3375 0.71 -1.0
3,545,870 + Psest_3375 0.71 -2.3
3,545,871 - Psest_3375 0.71 -0.6
3,545,871 - Psest_3375 0.71 -1.2
3,545,871 - Psest_3375 0.71 -0.4
3,545,874 + Psest_3375 0.72 -1.2
3,545,875 - Psest_3375 0.72 -3.0
3,545,875 - Psest_3375 0.72 -0.0
3,545,875 - Psest_3375 0.72 -2.0
3,545,875 - Psest_3375 0.72 +0.9
3,545,875 - Psest_3375 0.72 -2.7

Or see this region's nucleotide sequence