Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1465 and Psest_1466 are separated by 43 nucleotides Psest_1466 and Psest_1467 are separated by 130 nucleotides Psest_1467 and Psest_1468 are separated by 32 nucleotides Psest_1468 and Psest_1469 are separated by 14 nucleotides Psest_1469 and Psest_1470 are separated by 38 nucleotides
Psest_1465: Psest_1465 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 1,572,876 to 1,573,910
_1465
Psest_1466: Psest_1466 - transcriptional regulator, Spx/MgsR family, at 1,573,954 to 1,574,325
_1466
Psest_1467: Psest_1467 - Thioredoxin., at 1,574,456 to 1,574,881
_1467
Psest_1468: Psest_1468 - hypothetical protein, at 1,574,914 to 1,575,159
_1468
Psest_1469: Psest_1469 - hypothetical protein, at 1,575,174 to 1,575,335
_1469
Psest_1470: Psest_1470 - succinyldiaminopimelate transaminase, at 1,575,374 to 1,576,570
_1470
Position (kb)
1574
1575 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1573.983 kb on - strand at 1573.983 kb on - strand at 1574.014 kb on - strand, within Psest_1466 at 1574.030 kb on - strand, within Psest_1466 at 1574.198 kb on - strand, within Psest_1466 at 1574.214 kb on - strand, within Psest_1466 at 1574.214 kb on - strand, within Psest_1466 at 1574.257 kb on - strand, within Psest_1466 at 1574.326 kb on - strand at 1574.326 kb on - strand at 1574.368 kb on - strand at 1574.766 kb on + strand, within Psest_1467 at 1574.766 kb on + strand, within Psest_1467 at 1574.766 kb on + strand, within Psest_1467 at 1574.766 kb on + strand, within Psest_1467 at 1574.766 kb on + strand, within Psest_1467 at 1574.767 kb on - strand, within Psest_1467 at 1574.767 kb on - strand, within Psest_1467 at 1574.767 kb on - strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.777 kb on + strand, within Psest_1467 at 1574.778 kb on - strand, within Psest_1467 at 1574.778 kb on - strand, within Psest_1467 at 1574.778 kb on - strand, within Psest_1467 at 1574.802 kb on + strand, within Psest_1467 at 1574.803 kb on - strand, within Psest_1467 at 1574.803 kb on - strand, within Psest_1467 at 1574.861 kb on + strand at 1574.861 kb on + strand at 1574.861 kb on + strand at 1574.862 kb on - strand at 1574.862 kb on - strand at 1574.912 kb on + strand at 1574.912 kb on + strand at 1574.912 kb on + strand at 1574.913 kb on - strand at 1575.029 kb on + strand, within Psest_1468 at 1575.102 kb on + strand, within Psest_1468 at 1575.110 kb on + strand, within Psest_1468 at 1575.110 kb on + strand, within Psest_1468 at 1575.173 kb on + strand at 1575.173 kb on + strand at 1575.174 kb on - strand at 1575.174 kb on - strand at 1575.498 kb on + strand, within Psest_1470 at 1575.513 kb on - strand, within Psest_1470 at 1575.585 kb on + strand, within Psest_1470 at 1575.585 kb on + strand, within Psest_1470 at 1575.585 kb on + strand, within Psest_1470 at 1575.586 kb on - strand, within Psest_1470 at 1575.586 kb on - strand, within Psest_1470 at 1575.586 kb on - strand, within Psest_1470 at 1575.586 kb on - strand, within Psest_1470 at 1575.586 kb on - strand, within Psest_1470 at 1575.586 kb on - strand, within Psest_1470 at 1575.586 kb on - strand, within Psest_1470 at 1575.586 kb on - strand, within Psest_1470 at 1575.586 kb on - strand, within Psest_1470 at 1575.680 kb on + strand, within Psest_1470 at 1575.681 kb on - strand, within Psest_1470 at 1575.750 kb on + strand, within Psest_1470 at 1575.750 kb on + strand, within Psest_1470 at 1575.751 kb on - strand, within Psest_1470 at 1575.751 kb on - strand, within Psest_1470 at 1575.751 kb on - strand, within Psest_1470 at 1575.751 kb on - strand, within Psest_1470 at 1575.867 kb on + strand, within Psest_1470 at 1575.867 kb on + strand, within Psest_1470 at 1575.868 kb on - strand, within Psest_1470 at 1575.868 kb on - strand, within Psest_1470
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 1,573,983 - -0.5 1,573,983 - -1.8 1,574,014 - Psest_1466 0.16 -0.5 1,574,030 - Psest_1466 0.20 -1.5 1,574,198 - Psest_1466 0.66 -0.4 1,574,214 - Psest_1466 0.70 -0.5 1,574,214 - Psest_1466 0.70 -2.8 1,574,257 - Psest_1466 0.81 +0.6 1,574,326 - -1.3 1,574,326 - +0.3 1,574,368 - -1.2 1,574,766 + Psest_1467 0.73 -0.6 1,574,766 + Psest_1467 0.73 -0.7 1,574,766 + Psest_1467 0.73 +0.4 1,574,766 + Psest_1467 0.73 -0.7 1,574,766 + Psest_1467 0.73 -0.4 1,574,767 - Psest_1467 0.73 -3.3 1,574,767 - Psest_1467 0.73 -1.4 1,574,767 - Psest_1467 0.73 -0.2 1,574,777 + Psest_1467 0.75 -0.1 1,574,777 + Psest_1467 0.75 -0.9 1,574,777 + Psest_1467 0.75 -0.2 1,574,777 + Psest_1467 0.75 -0.1 1,574,777 + Psest_1467 0.75 +0.4 1,574,777 + Psest_1467 0.75 +0.1 1,574,777 + Psest_1467 0.75 +0.2 1,574,777 + Psest_1467 0.75 -0.6 1,574,777 + Psest_1467 0.75 -0.7 1,574,778 - Psest_1467 0.76 -1.2 1,574,778 - Psest_1467 0.76 -0.1 1,574,778 - Psest_1467 0.76 -0.4 1,574,802 + Psest_1467 0.81 +0.1 1,574,803 - Psest_1467 0.81 -1.1 1,574,803 - Psest_1467 0.81 -0.3 1,574,861 + +0.6 1,574,861 + +0.6 1,574,861 + +0.3 1,574,862 - -1.6 1,574,862 - -1.3 1,574,912 + +0.6 1,574,912 + -0.2 1,574,912 + +0.8 1,574,913 - +1.1 1,575,029 + Psest_1468 0.47 -0.8 1,575,102 + Psest_1468 0.76 +0.1 1,575,110 + Psest_1468 0.80 +0.4 1,575,110 + Psest_1468 0.80 -0.5 1,575,173 + -0.9 1,575,173 + -1.8 1,575,174 - +0.4 1,575,174 - +0.5 1,575,498 + Psest_1470 0.10 +0.7 1,575,513 - Psest_1470 0.12 -0.3 1,575,585 + Psest_1470 0.18 -1.9 1,575,585 + Psest_1470 0.18 -0.4 1,575,585 + Psest_1470 0.18 -0.3 1,575,586 - Psest_1470 0.18 +0.3 1,575,586 - Psest_1470 0.18 +0.3 1,575,586 - Psest_1470 0.18 -0.1 1,575,586 - Psest_1470 0.18 -0.4 1,575,586 - Psest_1470 0.18 -0.5 1,575,586 - Psest_1470 0.18 -0.8 1,575,586 - Psest_1470 0.18 +0.6 1,575,586 - Psest_1470 0.18 +0.5 1,575,586 - Psest_1470 0.18 -0.4 1,575,680 + Psest_1470 0.26 -0.2 1,575,681 - Psest_1470 0.26 -0.6 1,575,750 + Psest_1470 0.31 -1.7 1,575,750 + Psest_1470 0.31 +0.7 1,575,751 - Psest_1470 0.31 +0.0 1,575,751 - Psest_1470 0.31 -0.4 1,575,751 - Psest_1470 0.31 +0.2 1,575,751 - Psest_1470 0.31 +1.0 1,575,867 + Psest_1470 0.41 -0.3 1,575,867 + Psest_1470 0.41 +0.0 1,575,868 - Psest_1470 0.41 -1.5 1,575,868 - Psest_1470 0.41 -0.1
Or see this region's nucleotide sequence