Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4088

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4086 and Psest_4087 overlap by 56 nucleotidesPsest_4087 and Psest_4088 are separated by 101 nucleotidesPsest_4088 and Psest_4089 are separated by 141 nucleotides Psest_4086: Psest_4086 - Transcriptional regulator, at 4,262,661 to 4,263,620 _4086 Psest_4087: Psest_4087 - hypothetical protein, at 4,263,565 to 4,263,777 _4087 Psest_4088: Psest_4088 - Transcriptional regulators, at 4,263,879 to 4,264,745 _4088 Psest_4089: Psest_4089 - glucose-6-phosphate 1-dehydrogenase, at 4,264,887 to 4,266,329 _4089 Position (kb) 4263 4264 4265Strain fitness (log2 ratio) -2 -1 0 1 2at 4262.988 kb on + strand, within Psest_4086at 4262.989 kb on - strand, within Psest_4086at 4262.989 kb on - strand, within Psest_4086at 4262.989 kb on - strand, within Psest_4086at 4262.989 kb on - strand, within Psest_4086at 4262.989 kb on - strand, within Psest_4086at 4262.989 kb on - strand, within Psest_4086at 4263.037 kb on + strand, within Psest_4086at 4263.038 kb on - strand, within Psest_4086at 4263.038 kb on - strand, within Psest_4086at 4263.297 kb on + strand, within Psest_4086at 4263.297 kb on + strand, within Psest_4086at 4263.297 kb on + strand, within Psest_4086at 4263.298 kb on - strand, within Psest_4086at 4263.298 kb on - strand, within Psest_4086at 4263.298 kb on - strand, within Psest_4086at 4263.388 kb on + strand, within Psest_4086at 4263.389 kb on - strand, within Psest_4086at 4263.471 kb on + strand, within Psest_4086at 4263.471 kb on + strand, within Psest_4086at 4263.638 kb on + strand, within Psest_4087at 4263.675 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.677 kb on + strand, within Psest_4087at 4263.678 kb on - strand, within Psest_4087at 4263.678 kb on - strand, within Psest_4087at 4263.678 kb on - strand, within Psest_4087at 4263.678 kb on - strand, within Psest_4087at 4263.678 kb on - strand, within Psest_4087at 4263.678 kb on - strand, within Psest_4087at 4263.678 kb on - strand, within Psest_4087at 4263.678 kb on - strand, within Psest_4087at 4263.678 kb on - strand, within Psest_4087at 4263.798 kb on + strandat 4264.045 kb on + strand, within Psest_4088at 4264.045 kb on + strand, within Psest_4088at 4264.045 kb on + strand, within Psest_4088at 4264.045 kb on + strand, within Psest_4088at 4264.045 kb on + strand, within Psest_4088at 4264.045 kb on + strand, within Psest_4088at 4264.046 kb on - strand, within Psest_4088at 4264.046 kb on - strand, within Psest_4088at 4264.046 kb on - strand, within Psest_4088at 4264.046 kb on - strand, within Psest_4088at 4264.345 kb on + strand, within Psest_4088at 4264.704 kb on + strandat 4264.760 kb on - strandat 4264.819 kb on + strandat 4264.819 kb on + strandat 4264.819 kb on + strandat 4264.820 kb on - strandat 4264.820 kb on - strandat 4264.834 kb on + strandat 4264.834 kb on + strandat 4264.834 kb on + strandat 4264.834 kb on + strandat 4264.834 kb on + strandat 4264.834 kb on + strandat 4264.835 kb on - strandat 4264.835 kb on - strandat 4264.835 kb on - strandat 4264.835 kb on - strandat 4264.835 kb on - strandat 4264.836 kb on + strandat 4264.836 kb on + strandat 4264.837 kb on - strandat 4264.837 kb on - strandat 4264.837 kb on - strandat 4264.837 kb on - strandat 4264.837 kb on - strandat 4264.837 kb on - strandat 4264.837 kb on - strandat 4264.839 kb on + strandat 4264.839 kb on + strandat 4264.839 kb on + strandat 4264.839 kb on + strandat 4264.839 kb on + strandat 4264.839 kb on + strandat 4264.839 kb on + strandat 4264.839 kb on + strandat 4264.839 kb on + strandat 4264.839 kb on + strandat 4264.839 kb on + strandat 4264.839 kb on + strandat 4264.840 kb on - strandat 4264.840 kb on - strandat 4264.874 kb on + strandat 4264.962 kb on + strandat 4264.963 kb on - strandat 4264.963 kb on - strandat 4265.137 kb on - strand, within Psest_4089at 4265.137 kb on - strand, within Psest_4089at 4265.169 kb on + strand, within Psest_4089at 4265.169 kb on + strand, within Psest_4089at 4265.170 kb on - strand, within Psest_4089at 4265.170 kb on - strand, within Psest_4089at 4265.170 kb on - strand, within Psest_4089at 4265.170 kb on - strand, within Psest_4089at 4265.220 kb on + strand, within Psest_4089at 4265.220 kb on + strand, within Psest_4089at 4265.220 kb on + strand, within Psest_4089at 4265.220 kb on + strand, within Psest_4089at 4265.220 kb on + strand, within Psest_4089at 4265.221 kb on - strand, within Psest_4089at 4265.221 kb on - strand, within Psest_4089at 4265.221 kb on - strand, within Psest_4089at 4265.223 kb on + strand, within Psest_4089at 4265.223 kb on + strand, within Psest_4089at 4265.223 kb on + strand, within Psest_4089at 4265.223 kb on + strand, within Psest_4089at 4265.223 kb on + strand, within Psest_4089at 4265.224 kb on - strand, within Psest_4089at 4265.224 kb on - strand, within Psest_4089at 4265.224 kb on - strand, within Psest_4089at 4265.394 kb on + strand, within Psest_4089at 4265.410 kb on - strand, within Psest_4089at 4265.551 kb on - strand, within Psest_4089at 4265.554 kb on - strand, within Psest_4089

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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4,262,988 + Psest_4086 0.34 -0.2
4,262,989 - Psest_4086 0.34 -2.1
4,262,989 - Psest_4086 0.34 -0.1
4,262,989 - Psest_4086 0.34 -0.6
4,262,989 - Psest_4086 0.34 +0.8
4,262,989 - Psest_4086 0.34 -1.5
4,262,989 - Psest_4086 0.34 -0.2
4,263,037 + Psest_4086 0.39 -0.3
4,263,038 - Psest_4086 0.39 -0.4
4,263,038 - Psest_4086 0.39 -1.8
4,263,297 + Psest_4086 0.66 +0.2
4,263,297 + Psest_4086 0.66 -0.5
4,263,297 + Psest_4086 0.66 +0.8
4,263,298 - Psest_4086 0.66 +0.2
4,263,298 - Psest_4086 0.66 -1.5
4,263,298 - Psest_4086 0.66 +0.8
4,263,388 + Psest_4086 0.76 -0.7
4,263,389 - Psest_4086 0.76 +0.3
4,263,471 + Psest_4086 0.84 -0.2
4,263,471 + Psest_4086 0.84 -0.4
4,263,638 + Psest_4087 0.34 -0.0
4,263,675 + Psest_4087 0.52 +0.1
4,263,677 + Psest_4087 0.53 -0.3
4,263,677 + Psest_4087 0.53 +0.2
4,263,677 + Psest_4087 0.53 +0.2
4,263,677 + Psest_4087 0.53 +0.9
4,263,677 + Psest_4087 0.53 +0.3
4,263,677 + Psest_4087 0.53 +1.5
4,263,677 + Psest_4087 0.53 +0.5
4,263,677 + Psest_4087 0.53 +0.7
4,263,677 + Psest_4087 0.53 +0.3
4,263,677 + Psest_4087 0.53 +0.0
4,263,677 + Psest_4087 0.53 +0.1
4,263,677 + Psest_4087 0.53 +0.4
4,263,677 + Psest_4087 0.53 +0.7
4,263,677 + Psest_4087 0.53 -0.1
4,263,677 + Psest_4087 0.53 -0.3
4,263,677 + Psest_4087 0.53 +0.7
4,263,677 + Psest_4087 0.53 -0.1
4,263,677 + Psest_4087 0.53 -0.5
4,263,677 + Psest_4087 0.53 -1.2
4,263,678 - Psest_4087 0.53 +0.8
4,263,678 - Psest_4087 0.53 +1.3
4,263,678 - Psest_4087 0.53 +2.6
4,263,678 - Psest_4087 0.53 +0.3
4,263,678 - Psest_4087 0.53 -1.7
4,263,678 - Psest_4087 0.53 +1.1
4,263,678 - Psest_4087 0.53 -0.5
4,263,678 - Psest_4087 0.53 +0.8
4,263,678 - Psest_4087 0.53 -0.5
4,263,798 + +0.5
4,264,045 + Psest_4088 0.19 +1.4
4,264,045 + Psest_4088 0.19 +0.2
4,264,045 + Psest_4088 0.19 -0.2
4,264,045 + Psest_4088 0.19 +1.1
4,264,045 + Psest_4088 0.19 +0.4
4,264,045 + Psest_4088 0.19 +1.6
4,264,046 - Psest_4088 0.19 +0.4
4,264,046 - Psest_4088 0.19 +1.0
4,264,046 - Psest_4088 0.19 -0.5
4,264,046 - Psest_4088 0.19 +0.3
4,264,345 + Psest_4088 0.54 +1.7
4,264,704 + -0.6
4,264,760 - +2.3
4,264,819 + +0.1
4,264,819 + +0.8
4,264,819 + -0.9
4,264,820 - +1.3
4,264,820 - -1.0
4,264,834 + +0.3
4,264,834 + +0.4
4,264,834 + +1.6
4,264,834 + -0.1
4,264,834 + +0.4
4,264,834 + +0.5
4,264,835 - -0.3
4,264,835 - -0.5
4,264,835 - +0.1
4,264,835 - +0.6
4,264,835 - -1.5
4,264,836 + +0.2
4,264,836 + +1.8
4,264,837 - -1.7
4,264,837 - -0.7
4,264,837 - -0.3
4,264,837 - -0.3
4,264,837 - +1.1
4,264,837 - -0.1
4,264,837 - +0.2
4,264,839 + +0.6
4,264,839 + -0.8
4,264,839 + +0.7
4,264,839 + -0.1
4,264,839 + +0.7
4,264,839 + -0.2
4,264,839 + -0.8
4,264,839 + +0.3
4,264,839 + +1.1
4,264,839 + +0.7
4,264,839 + -0.4
4,264,839 + -0.8
4,264,840 - +0.4
4,264,840 - -0.4
4,264,874 + -0.4
4,264,962 + +2.1
4,264,963 - +0.4
4,264,963 - +0.2
4,265,137 - Psest_4089 0.17 +0.2
4,265,137 - Psest_4089 0.17 +0.2
4,265,169 + Psest_4089 0.20 -0.6
4,265,169 + Psest_4089 0.20 +0.3
4,265,170 - Psest_4089 0.20 +0.1
4,265,170 - Psest_4089 0.20 -0.5
4,265,170 - Psest_4089 0.20 -0.5
4,265,170 - Psest_4089 0.20 -1.7
4,265,220 + Psest_4089 0.23 -0.4
4,265,220 + Psest_4089 0.23 -0.8
4,265,220 + Psest_4089 0.23 -1.4
4,265,220 + Psest_4089 0.23 -0.8
4,265,220 + Psest_4089 0.23 -1.3
4,265,221 - Psest_4089 0.23 +0.5
4,265,221 - Psest_4089 0.23 +0.5
4,265,221 - Psest_4089 0.23 +2.1
4,265,223 + Psest_4089 0.23 +0.6
4,265,223 + Psest_4089 0.23 -1.2
4,265,223 + Psest_4089 0.23 +0.5
4,265,223 + Psest_4089 0.23 +0.1
4,265,223 + Psest_4089 0.23 -2.1
4,265,224 - Psest_4089 0.23 -0.1
4,265,224 - Psest_4089 0.23 +0.1
4,265,224 - Psest_4089 0.23 +0.3
4,265,394 + Psest_4089 0.35 +1.1
4,265,410 - Psest_4089 0.36 -0.9
4,265,551 - Psest_4089 0.46 +1.0
4,265,554 - Psest_4089 0.46 +0.0

Or see this region's nucleotide sequence