Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3446

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3444 and Psest_3445 overlap by 4 nucleotidesPsest_3445 and Psest_3446 overlap by 4 nucleotidesPsest_3446 and Psest_3447 are separated by 198 nucleotidesPsest_3447 and Psest_3448 overlap by 8 nucleotides Psest_3444: Psest_3444 - Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs, at 3,614,927 to 3,617,128 _3444 Psest_3445: Psest_3445 - Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs, at 3,617,125 to 3,618,111 _3445 Psest_3446: Psest_3446 - Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs, at 3,618,108 to 3,618,620 _3446 Psest_3447: Psest_3447 - Uncharacterized MobA-related protein, at 3,618,819 to 3,619,409 _3447 Psest_3448: Psest_3448 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 3,619,402 to 3,620,376 _3448 Position (kb) 3618 3619Strain fitness (log2 ratio) -2 -1 0 1 2at 3617.408 kb on + strand, within Psest_3445at 3617.408 kb on + strand, within Psest_3445at 3617.408 kb on + strand, within Psest_3445at 3617.408 kb on + strand, within Psest_3445at 3617.409 kb on - strand, within Psest_3445at 3617.409 kb on - strand, within Psest_3445at 3617.409 kb on - strand, within Psest_3445at 3617.750 kb on + strand, within Psest_3445at 3617.750 kb on + strand, within Psest_3445at 3617.750 kb on + strand, within Psest_3445at 3617.750 kb on + strand, within Psest_3445at 3617.751 kb on - strand, within Psest_3445at 3617.751 kb on - strand, within Psest_3445at 3617.751 kb on - strand, within Psest_3445at 3617.751 kb on - strand, within Psest_3445at 3617.756 kb on + strand, within Psest_3445at 3617.756 kb on + strand, within Psest_3445at 3617.756 kb on + strand, within Psest_3445at 3617.756 kb on + strand, within Psest_3445at 3617.756 kb on + strand, within Psest_3445at 3617.757 kb on - strand, within Psest_3445at 3617.757 kb on - strand, within Psest_3445at 3617.757 kb on - strand, within Psest_3445at 3617.757 kb on - strand, within Psest_3445at 3617.757 kb on - strand, within Psest_3445at 3617.757 kb on - strand, within Psest_3445at 3617.759 kb on + strand, within Psest_3445at 3617.759 kb on + strand, within Psest_3445at 3617.759 kb on + strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3618.038 kb on + strandat 3618.038 kb on + strandat 3618.039 kb on - strandat 3618.095 kb on + strandat 3618.096 kb on - strandat 3618.253 kb on - strand, within Psest_3446at 3618.607 kb on + strandat 3618.607 kb on + strandat 3618.608 kb on - strandat 3618.671 kb on + strandat 3618.797 kb on + strandat 3619.000 kb on + strand, within Psest_3447at 3619.069 kb on + strand, within Psest_3447at 3619.501 kb on - strand, within Psest_3448at 3619.501 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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3,617,408 + Psest_3445 0.29 +1.1
3,617,408 + Psest_3445 0.29 -0.0
3,617,408 + Psest_3445 0.29 +1.7
3,617,408 + Psest_3445 0.29 -0.1
3,617,409 - Psest_3445 0.29 -0.3
3,617,409 - Psest_3445 0.29 +0.3
3,617,409 - Psest_3445 0.29 -0.0
3,617,750 + Psest_3445 0.63 +0.3
3,617,750 + Psest_3445 0.63 +0.4
3,617,750 + Psest_3445 0.63 -0.2
3,617,750 + Psest_3445 0.63 -0.5
3,617,751 - Psest_3445 0.63 -1.5
3,617,751 - Psest_3445 0.63 +0.8
3,617,751 - Psest_3445 0.63 -0.6
3,617,751 - Psest_3445 0.63 +0.2
3,617,756 + Psest_3445 0.64 -2.7
3,617,756 + Psest_3445 0.64 +0.3
3,617,756 + Psest_3445 0.64 +0.4
3,617,756 + Psest_3445 0.64 -1.4
3,617,756 + Psest_3445 0.64 +0.0
3,617,757 - Psest_3445 0.64 +2.2
3,617,757 - Psest_3445 0.64 +0.2
3,617,757 - Psest_3445 0.64 -0.7
3,617,757 - Psest_3445 0.64 -0.4
3,617,757 - Psest_3445 0.64 -0.8
3,617,757 - Psest_3445 0.64 -0.4
3,617,759 + Psest_3445 0.64 +1.0
3,617,759 + Psest_3445 0.64 +0.9
3,617,759 + Psest_3445 0.64 -1.0
3,617,760 - Psest_3445 0.64 -1.5
3,617,760 - Psest_3445 0.64 +0.6
3,617,760 - Psest_3445 0.64 -0.2
3,617,760 - Psest_3445 0.64 +0.8
3,617,760 - Psest_3445 0.64 -1.3
3,617,760 - Psest_3445 0.64 +0.2
3,617,760 - Psest_3445 0.64 +0.8
3,618,038 + -0.2
3,618,038 + +0.5
3,618,039 - +0.2
3,618,095 + -1.0
3,618,096 - +0.2
3,618,253 - Psest_3446 0.28 -0.7
3,618,607 + +0.7
3,618,607 + +0.2
3,618,608 - -0.1
3,618,671 + -1.2
3,618,797 + +0.4
3,619,000 + Psest_3447 0.31 -0.7
3,619,069 + Psest_3447 0.42 -0.6
3,619,501 - Psest_3448 0.10 -0.2
3,619,501 - -1.0

Or see this region's nucleotide sequence