Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2532

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2531 and Psest_2532 are separated by 12 nucleotidesPsest_2532 and Psest_2533 are separated by 7 nucleotides Psest_2531: Psest_2531 - cytochrome c oxidase accessory protein FixG, at 2,711,184 to 2,712,596 _2531 Psest_2532: Psest_2532 - Uncharacterized protein conserved in bacteria, at 2,712,609 to 2,713,109 _2532 Psest_2533: Psest_2533 - copper-(or silver)-translocating P-type ATPase/heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase, at 2,713,117 to 2,715,531 _2533 Position (kb) 2712 2713 2714Strain fitness (log2 ratio) -1 0 1 2 3 4at 2711.812 kb on - strand, within Psest_2531at 2711.850 kb on + strand, within Psest_2531at 2711.850 kb on + strand, within Psest_2531at 2711.850 kb on + strand, within Psest_2531at 2711.850 kb on + strand, within Psest_2531at 2711.850 kb on + strand, within Psest_2531at 2711.850 kb on + strand, within Psest_2531at 2711.850 kb on + strand, within Psest_2531at 2711.850 kb on + strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.851 kb on - strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.852 kb on + strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.853 kb on - strand, within Psest_2531at 2711.913 kb on + strand, within Psest_2531at 2711.914 kb on - strand, within Psest_2531at 2711.964 kb on + strand, within Psest_2531at 2711.965 kb on - strand, within Psest_2531at 2712.138 kb on + strand, within Psest_2531at 2712.138 kb on + strand, within Psest_2531at 2712.139 kb on - strand, within Psest_2531at 2712.139 kb on - strand, within Psest_2531at 2712.139 kb on - strand, within Psest_2531at 2712.139 kb on - strand, within Psest_2531at 2712.201 kb on + strand, within Psest_2531at 2712.249 kb on + strand, within Psest_2531at 2712.250 kb on - strand, within Psest_2531at 2712.250 kb on - strand, within Psest_2531at 2712.333 kb on + strand, within Psest_2531at 2712.334 kb on - strand, within Psest_2531at 2712.334 kb on - strand, within Psest_2531at 2712.411 kb on + strand, within Psest_2531at 2712.431 kb on - strand, within Psest_2531at 2712.493 kb on + strandat 2712.606 kb on + strandat 2712.606 kb on + strandat 2712.606 kb on + strandat 2712.606 kb on + strandat 2712.606 kb on + strandat 2712.606 kb on + strandat 2712.606 kb on + strandat 2712.606 kb on + strandat 2712.606 kb on + strandat 2712.606 kb on + strandat 2712.606 kb on + strandat 2712.606 kb on + strandat 2712.753 kb on + strand, within Psest_2532at 2712.753 kb on + strand, within Psest_2532at 2712.753 kb on + strand, within Psest_2532at 2712.753 kb on + strand, within Psest_2532at 2712.753 kb on + strand, within Psest_2532at 2712.753 kb on + strand, within Psest_2532at 2712.756 kb on + strand, within Psest_2532at 2712.756 kb on + strand, within Psest_2532at 2712.975 kb on + strand, within Psest_2532

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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2,711,812 - Psest_2531 0.44 +0.3
2,711,850 + Psest_2531 0.47 +1.0
2,711,850 + Psest_2531 0.47 +2.1
2,711,850 + Psest_2531 0.47 +0.3
2,711,850 + Psest_2531 0.47 +1.9
2,711,850 + Psest_2531 0.47 +1.2
2,711,850 + Psest_2531 0.47 +0.6
2,711,850 + Psest_2531 0.47 +0.5
2,711,850 + Psest_2531 0.47 +2.7
2,711,851 - Psest_2531 0.47 +1.4
2,711,851 - Psest_2531 0.47 +1.6
2,711,851 - Psest_2531 0.47 +0.6
2,711,851 - Psest_2531 0.47 +2.9
2,711,851 - Psest_2531 0.47 +1.3
2,711,851 - Psest_2531 0.47 -0.3
2,711,851 - Psest_2531 0.47 +2.6
2,711,851 - Psest_2531 0.47 +1.4
2,711,851 - Psest_2531 0.47 +0.8
2,711,851 - Psest_2531 0.47 -0.9
2,711,851 - Psest_2531 0.47 -0.5
2,711,851 - Psest_2531 0.47 +1.2
2,711,851 - Psest_2531 0.47 +1.7
2,711,851 - Psest_2531 0.47 +2.4
2,711,851 - Psest_2531 0.47 +1.8
2,711,851 - Psest_2531 0.47 +2.3
2,711,851 - Psest_2531 0.47 +1.4
2,711,851 - Psest_2531 0.47 +2.0
2,711,851 - Psest_2531 0.47 +0.4
2,711,851 - Psest_2531 0.47 +1.6
2,711,851 - Psest_2531 0.47 +0.4
2,711,851 - Psest_2531 0.47 +1.1
2,711,851 - Psest_2531 0.47 +0.8
2,711,851 - Psest_2531 0.47 +1.7
2,711,851 - Psest_2531 0.47 +1.7
2,711,852 + Psest_2531 0.47 +1.7
2,711,852 + Psest_2531 0.47 +4.4
2,711,852 + Psest_2531 0.47 +1.5
2,711,852 + Psest_2531 0.47 +1.3
2,711,852 + Psest_2531 0.47 -1.3
2,711,852 + Psest_2531 0.47 +2.0
2,711,852 + Psest_2531 0.47 +2.5
2,711,852 + Psest_2531 0.47 +1.7
2,711,852 + Psest_2531 0.47 +0.7
2,711,852 + Psest_2531 0.47 +2.6
2,711,852 + Psest_2531 0.47 +2.8
2,711,852 + Psest_2531 0.47 +0.8
2,711,852 + Psest_2531 0.47 +2.0
2,711,852 + Psest_2531 0.47 +0.4
2,711,852 + Psest_2531 0.47 -1.2
2,711,852 + Psest_2531 0.47 +1.8
2,711,852 + Psest_2531 0.47 +1.6
2,711,853 - Psest_2531 0.47 +1.2
2,711,853 - Psest_2531 0.47 +2.7
2,711,853 - Psest_2531 0.47 +1.6
2,711,853 - Psest_2531 0.47 +1.9
2,711,853 - Psest_2531 0.47 +1.9
2,711,853 - Psest_2531 0.47 +1.7
2,711,853 - Psest_2531 0.47 +1.5
2,711,853 - Psest_2531 0.47 +0.5
2,711,853 - Psest_2531 0.47 +2.9
2,711,853 - Psest_2531 0.47 +1.7
2,711,853 - Psest_2531 0.47 +1.9
2,711,853 - Psest_2531 0.47 +1.0
2,711,853 - Psest_2531 0.47 +1.9
2,711,853 - Psest_2531 0.47 +0.9
2,711,853 - Psest_2531 0.47 +2.2
2,711,853 - Psest_2531 0.47 +0.9
2,711,853 - Psest_2531 0.47 +3.0
2,711,853 - Psest_2531 0.47 +2.5
2,711,853 - Psest_2531 0.47 +0.3
2,711,913 + Psest_2531 0.52 +1.4
2,711,914 - Psest_2531 0.52 +2.5
2,711,964 + Psest_2531 0.55 +1.0
2,711,965 - Psest_2531 0.55 +3.8
2,712,138 + Psest_2531 0.68 +1.4
2,712,138 + Psest_2531 0.68 +2.1
2,712,139 - Psest_2531 0.68 -0.3
2,712,139 - Psest_2531 0.68 +2.0
2,712,139 - Psest_2531 0.68 +1.7
2,712,139 - Psest_2531 0.68 +0.5
2,712,201 + Psest_2531 0.72 +1.7
2,712,249 + Psest_2531 0.75 +0.3
2,712,250 - Psest_2531 0.75 +3.3
2,712,250 - Psest_2531 0.75 +0.7
2,712,333 + Psest_2531 0.81 +2.3
2,712,334 - Psest_2531 0.81 +1.4
2,712,334 - Psest_2531 0.81 +3.0
2,712,411 + Psest_2531 0.87 +1.9
2,712,431 - Psest_2531 0.88 +0.7
2,712,493 + +2.2
2,712,606 + -1.4
2,712,606 + +1.5
2,712,606 + +0.5
2,712,606 + +1.8
2,712,606 + +0.2
2,712,606 + +0.2
2,712,606 + -1.3
2,712,606 + +1.5
2,712,606 + +0.8
2,712,606 + +0.8
2,712,606 + +2.4
2,712,606 + +0.8
2,712,753 + Psest_2532 0.29 +1.4
2,712,753 + Psest_2532 0.29 +0.6
2,712,753 + Psest_2532 0.29 +3.5
2,712,753 + Psest_2532 0.29 +1.7
2,712,753 + Psest_2532 0.29 +0.7
2,712,753 + Psest_2532 0.29 +1.9
2,712,756 + Psest_2532 0.29 +2.5
2,712,756 + Psest_2532 0.29 +1.7
2,712,975 + Psest_2532 0.73 +1.0

Or see this region's nucleotide sequence