Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1905

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1904 and Psest_1905 are separated by 116 nucleotidesPsest_1905 and Psest_1907 are separated by 284 nucleotidesPsest_1907 and Psest_1908 are separated by 3 nucleotidesPsest_1908 and Psest_1909 are separated by 3 nucleotides Psest_1904: Psest_1904 - Arabinose efflux permease, at 2,014,700 to 2,015,851 _1904 Psest_1905: Psest_1905 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 2,015,968 to 2,016,513 _1905 Psest_1907: Psest_1907 - hypothetical protein, at 2,016,798 to 2,017,007 _1907 Psest_1908: Psest_1908 - hypothetical protein, at 2,017,011 to 2,017,205 _1908 Psest_1909: Psest_1909 - Phosphohistidine phosphatase SixA, at 2,017,209 to 2,017,766 _1909 Position (kb) 2015 2016 2017Strain fitness (log2 ratio) -1 0 1 2at 2015.322 kb on - strand, within Psest_1904at 2015.360 kb on + strand, within Psest_1904at 2015.363 kb on + strand, within Psest_1904at 2015.364 kb on - strand, within Psest_1904at 2015.364 kb on - strand, within Psest_1904at 2015.364 kb on - strand, within Psest_1904at 2015.548 kb on - strand, within Psest_1904at 2015.608 kb on + strand, within Psest_1904at 2015.609 kb on - strand, within Psest_1904at 2015.816 kb on - strandat 2016.334 kb on + strand, within Psest_1905at 2016.341 kb on + strand, within Psest_1905at 2016.341 kb on + strand, within Psest_1905at 2016.439 kb on - strand, within Psest_1905at 2016.467 kb on - strandat 2016.565 kb on - strandat 2016.565 kb on - strandat 2016.565 kb on - strandat 2016.594 kb on + strandat 2016.594 kb on + strandat 2016.594 kb on + strandat 2016.594 kb on + strandat 2016.595 kb on - strandat 2016.595 kb on - strandat 2016.595 kb on - strandat 2016.683 kb on + strandat 2016.684 kb on - strandat 2016.764 kb on + strandat 2016.764 kb on + strandat 2016.764 kb on + strandat 2016.764 kb on + strandat 2016.765 kb on - strandat 2016.765 kb on - strandat 2016.769 kb on + strandat 2016.769 kb on + strandat 2016.769 kb on + strandat 2016.769 kb on + strandat 2016.770 kb on - strandat 2016.770 kb on - strandat 2016.770 kb on - strandat 2016.770 kb on - strandat 2016.770 kb on - strandat 2016.770 kb on - strandat 2016.773 kb on + strandat 2016.774 kb on - strandat 2016.848 kb on + strand, within Psest_1907at 2017.129 kb on + strand, within Psest_1908at 2017.203 kb on + strandat 2017.203 kb on + strandat 2017.312 kb on + strand, within Psest_1909at 2017.313 kb on - strand, within Psest_1909at 2017.313 kb on - strand, within Psest_1909at 2017.313 kb on - strand, within Psest_1909at 2017.466 kb on + strand, within Psest_1909at 2017.467 kb on - strand, within Psest_1909at 2017.467 kb on - strand, within Psest_1909at 2017.467 kb on - strand, within Psest_1909

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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2,015,322 - Psest_1904 0.54 +0.8
2,015,360 + Psest_1904 0.57 +0.1
2,015,363 + Psest_1904 0.58 -0.5
2,015,364 - Psest_1904 0.58 -0.4
2,015,364 - Psest_1904 0.58 +0.1
2,015,364 - Psest_1904 0.58 -1.4
2,015,548 - Psest_1904 0.74 +0.3
2,015,608 + Psest_1904 0.79 +1.2
2,015,609 - Psest_1904 0.79 +0.7
2,015,816 - +0.2
2,016,334 + Psest_1905 0.67 +1.1
2,016,341 + Psest_1905 0.68 -0.1
2,016,341 + Psest_1905 0.68 +1.3
2,016,439 - Psest_1905 0.86 +1.1
2,016,467 - +0.2
2,016,565 - -1.1
2,016,565 - +2.0
2,016,565 - -0.2
2,016,594 + +0.6
2,016,594 + +1.3
2,016,594 + -1.1
2,016,594 + -0.1
2,016,595 - +0.7
2,016,595 - +0.5
2,016,595 - -0.6
2,016,683 + +0.7
2,016,684 - +0.1
2,016,764 + -0.9
2,016,764 + -1.4
2,016,764 + +1.2
2,016,764 + -1.2
2,016,765 - -0.0
2,016,765 - -0.7
2,016,769 + -0.5
2,016,769 + +0.6
2,016,769 + +1.0
2,016,769 + -0.4
2,016,770 - +0.1
2,016,770 - -0.3
2,016,770 - +1.3
2,016,770 - -0.6
2,016,770 - +1.0
2,016,770 - +0.0
2,016,773 + +0.4
2,016,774 - +1.1
2,016,848 + Psest_1907 0.24 -0.1
2,017,129 + Psest_1908 0.61 -1.3
2,017,203 + -0.2
2,017,203 + +0.3
2,017,312 + Psest_1909 0.18 +0.8
2,017,313 - Psest_1909 0.19 +0.4
2,017,313 - Psest_1909 0.19 -0.7
2,017,313 - Psest_1909 0.19 -0.2
2,017,466 + Psest_1909 0.46 -0.6
2,017,467 - Psest_1909 0.46 +0.2
2,017,467 - Psest_1909 0.46 -0.6
2,017,467 - Psest_1909 0.46 +0.4

Or see this region's nucleotide sequence