Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0184 and Psest_0185 are separated by 265 nucleotides Psest_0185 and Psest_0186 are separated by 183 nucleotides Psest_0186 and Psest_0187 are separated by 6 nucleotides
Psest_0184: Psest_0184 - ribosome biogenesis GTP-binding protein YsxC/EngB, at 180,007 to 180,660
_0184
Psest_0185: Psest_0185 - Cytochrome c553, at 180,926 to 181,558
_0185
Psest_0186: Psest_0186 - Protein-disulfide isomerase, at 181,742 to 182,371
_0186
Psest_0187: Psest_0187 - Metal-dependent hydrolase, at 182,378 to 183,247
_0187
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.959 kb on + strand at 179.960 kb on - strand at 179.960 kb on - strand at 179.960 kb on - strand at 179.960 kb on - strand at 179.960 kb on - strand at 179.960 kb on - strand at 179.960 kb on - strand at 179.960 kb on - strand at 179.960 kb on - strand at 179.960 kb on - strand at 179.960 kb on - strand at 180.008 kb on + strand at 180.009 kb on - strand at 180.009 kb on - strand at 180.009 kb on - strand at 180.722 kb on - strand at 180.722 kb on - strand at 180.722 kb on - strand at 180.723 kb on + strand at 180.723 kb on + strand at 180.723 kb on + strand at 180.723 kb on + strand at 180.723 kb on + strand at 180.723 kb on + strand at 180.723 kb on + strand at 180.723 kb on + strand at 180.723 kb on + strand at 180.723 kb on + strand at 180.723 kb on + strand at 180.723 kb on + strand at 180.723 kb on + strand at 180.723 kb on + strand at 180.724 kb on - strand at 180.724 kb on - strand at 180.724 kb on - strand at 180.724 kb on - strand at 180.724 kb on - strand at 180.724 kb on - strand at 180.724 kb on - strand at 180.724 kb on - strand at 180.724 kb on - strand at 180.724 kb on - strand at 180.724 kb on - strand at 180.724 kb on - strand at 180.724 kb on - strand at 180.725 kb on + strand at 180.725 kb on + strand at 180.725 kb on + strand at 180.725 kb on + strand at 180.725 kb on + strand at 180.725 kb on + strand at 180.725 kb on + strand at 180.725 kb on + strand at 180.725 kb on + strand at 180.725 kb on + strand at 180.725 kb on + strand at 180.725 kb on + strand at 180.725 kb on + strand at 180.726 kb on - strand at 180.726 kb on - strand at 180.726 kb on - strand at 180.741 kb on - strand at 180.773 kb on + strand at 180.843 kb on + strand at 180.844 kb on - strand at 180.911 kb on + strand at 180.911 kb on + strand at 180.920 kb on + strand at 180.921 kb on - strand at 180.936 kb on + strand at 181.418 kb on + strand, within Psest_0185 at 181.419 kb on - strand, within Psest_0185 at 181.538 kb on + strand at 181.569 kb on - strand at 181.598 kb on + strand at 181.599 kb on - strand at 181.599 kb on - strand at 181.736 kb on + strand at 181.736 kb on + strand at 181.736 kb on + strand at 181.736 kb on + strand at 181.736 kb on + strand at 181.736 kb on + strand at 181.736 kb on + strand at 181.736 kb on + strand at 181.832 kb on + strand, within Psest_0186 at 181.833 kb on - strand, within Psest_0186 at 181.833 kb on - strand, within Psest_0186 at 181.833 kb on - strand, within Psest_0186 at 181.833 kb on - strand, within Psest_0186 at 182.016 kb on + strand, within Psest_0186 at 182.016 kb on + strand, within Psest_0186 at 182.017 kb on - strand, within Psest_0186 at 182.017 kb on - strand, within Psest_0186 at 182.017 kb on - strand, within Psest_0186 at 182.183 kb on + strand, within Psest_0186 at 182.184 kb on - strand, within Psest_0186 at 182.184 kb on - strand, within Psest_0186 at 182.211 kb on + strand, within Psest_0186 at 182.240 kb on + strand, within Psest_0186 at 182.282 kb on + strand, within Psest_0186 at 182.282 kb on + strand, within Psest_0186 at 182.282 kb on + strand, within Psest_0186 at 182.282 kb on + strand, within Psest_0186 at 182.282 kb on + strand, within Psest_0186 at 182.534 kb on + strand, within Psest_0187 at 182.534 kb on + strand, within Psest_0187
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 179,959 + +0.9 179,959 + +0.1 179,959 + -1.0 179,959 + -1.7 179,959 + -0.3 179,959 + +1.3 179,959 + +1.1 179,959 + +0.5 179,959 + +0.1 179,959 + -0.8 179,959 + +0.8 179,959 + -2.5 179,959 + -0.6 179,959 + +1.4 179,959 + -1.1 179,959 + -0.5 179,959 + +0.3 179,960 - +0.4 179,960 - -2.1 179,960 - +0.0 179,960 - -0.6 179,960 - +0.6 179,960 - +0.2 179,960 - -0.5 179,960 - -0.1 179,960 - -0.1 179,960 - +2.0 179,960 - +0.6 180,008 + -2.0 180,009 - +0.1 180,009 - -0.6 180,009 - -0.1 180,722 - +2.9 180,722 - +2.2 180,722 - +1.1 180,723 + +0.3 180,723 + +0.7 180,723 + -0.2 180,723 + -1.3 180,723 + +0.7 180,723 + -0.3 180,723 + +0.5 180,723 + -0.0 180,723 + +1.0 180,723 + +0.2 180,723 + -0.1 180,723 + +0.3 180,723 + -0.8 180,723 + +0.6 180,724 - +1.2 180,724 - +0.9 180,724 - +2.8 180,724 - +3.4 180,724 - +2.3 180,724 - +3.3 180,724 - +2.5 180,724 - +2.8 180,724 - +3.4 180,724 - +1.9 180,724 - +3.1 180,724 - +2.6 180,724 - +2.4 180,725 + -0.3 180,725 + +0.7 180,725 + +2.1 180,725 + -1.6 180,725 + +3.1 180,725 + +0.5 180,725 + +0.1 180,725 + -0.5 180,725 + -2.9 180,725 + -0.3 180,725 + +0.2 180,725 + -0.3 180,725 + +0.2 180,726 - +2.3 180,726 - +1.6 180,726 - +1.2 180,741 - +2.6 180,773 + -0.1 180,843 + -0.4 180,844 - +2.7 180,911 + +3.6 180,911 + +2.5 180,920 + +3.1 180,921 - +2.2 180,936 + +3.9 181,418 + Psest_0185 0.78 +2.4 181,419 - Psest_0185 0.78 +2.7 181,538 + +1.8 181,569 - +0.0 181,598 + +1.2 181,599 - +1.0 181,599 - +1.3 181,736 + +0.1 181,736 + -1.3 181,736 + -0.9 181,736 + -0.2 181,736 + -0.3 181,736 + +0.6 181,736 + -0.6 181,736 + -1.1 181,832 + Psest_0186 0.14 -0.4 181,833 - Psest_0186 0.14 -0.5 181,833 - Psest_0186 0.14 -0.7 181,833 - Psest_0186 0.14 +0.1 181,833 - Psest_0186 0.14 +0.4 182,016 + Psest_0186 0.43 -0.9 182,016 + Psest_0186 0.43 +0.2 182,017 - Psest_0186 0.44 +0.1 182,017 - Psest_0186 0.44 -0.9 182,017 - Psest_0186 0.44 -2.6 182,183 + Psest_0186 0.70 -0.0 182,184 - Psest_0186 0.70 -0.5 182,184 - Psest_0186 0.70 +0.9 182,211 + Psest_0186 0.74 +0.3 182,240 + Psest_0186 0.79 -0.1 182,282 + Psest_0186 0.86 -1.6 182,282 + Psest_0186 0.86 -0.5 182,282 + Psest_0186 0.86 -1.3 182,282 + Psest_0186 0.86 -0.2 182,282 + Psest_0186 0.86 +0.0 182,534 + Psest_0187 0.18 +1.3 182,534 + Psest_0187 0.18 +0.3
Or see this region's nucleotide sequence