Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1661

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1660 and Psest_1661 are separated by 1 nucleotidesPsest_1661 and Psest_1662 overlap by 4 nucleotidesPsest_1662 and Psest_1663 are separated by 146 nucleotides Psest_1660: Psest_1660 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit, at 1,769,506 to 1,770,729 _1660 Psest_1661: Psest_1661 - Membrane-associated lipoprotein involved in thiamine biosynthesis, at 1,770,731 to 1,771,783 _1661 Psest_1662: Psest_1662 - Uncharacterized protein conserved in bacteria, at 1,771,780 to 1,772,007 _1662 Psest_1663: Psest_1663 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 1,772,154 to 1,773,548 _1663 Position (kb) 1770 1771 1772Strain fitness (log2 ratio) -1 0 1 2 3at 1770.064 kb on + strand, within Psest_1660at 1770.100 kb on + strand, within Psest_1660at 1770.244 kb on + strand, within Psest_1660at 1770.457 kb on + strand, within Psest_1660at 1770.469 kb on + strand, within Psest_1660at 1770.469 kb on + strand, within Psest_1660at 1770.589 kb on + strand, within Psest_1660at 1770.628 kb on + strandat 1770.628 kb on + strandat 1770.628 kb on + strandat 1770.770 kb on + strandat 1770.770 kb on + strandat 1770.872 kb on + strand, within Psest_1661at 1770.872 kb on + strand, within Psest_1661at 1770.872 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1770.884 kb on + strand, within Psest_1661at 1771.647 kb on + strand, within Psest_1661at 1772.127 kb on + strandat 1772.151 kb on + strandat 1772.151 kb on + strandat 1772.151 kb on + strandat 1772.151 kb on + strandat 1772.151 kb on + strandat 1772.152 kb on - strandat 1772.164 kb on - strandat 1772.164 kb on - strandat 1772.637 kb on - strand, within Psest_1663at 1772.641 kb on - strand, within Psest_1663

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,770,064 + Psest_1660 0.46 +1.4
1,770,100 + Psest_1660 0.49 +0.3
1,770,244 + Psest_1660 0.60 +1.7
1,770,457 + Psest_1660 0.78 -0.5
1,770,469 + Psest_1660 0.79 -0.3
1,770,469 + Psest_1660 0.79 +2.2
1,770,589 + Psest_1660 0.88 +1.7
1,770,628 + +0.1
1,770,628 + +0.5
1,770,628 + +0.8
1,770,770 + -0.2
1,770,770 + +1.0
1,770,872 + Psest_1661 0.13 +0.3
1,770,872 + Psest_1661 0.13 +0.7
1,770,872 + Psest_1661 0.13 +2.7
1,770,884 + Psest_1661 0.15 +2.9
1,770,884 + Psest_1661 0.15 +0.1
1,770,884 + Psest_1661 0.15 +1.7
1,770,884 + Psest_1661 0.15 +1.1
1,770,884 + Psest_1661 0.15 +1.7
1,770,884 + Psest_1661 0.15 +2.7
1,770,884 + Psest_1661 0.15 +2.8
1,771,647 + Psest_1661 0.87 +1.3
1,772,127 + +0.6
1,772,151 + -0.7
1,772,151 + +0.3
1,772,151 + +1.1
1,772,151 + +2.7
1,772,151 + +1.5
1,772,152 - +0.2
1,772,164 - +0.8
1,772,164 - +0.9
1,772,637 - Psest_1663 0.35 +0.3
1,772,641 - Psest_1663 0.35 -0.7

Or see this region's nucleotide sequence