Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4072

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4071 and Psest_4072 are separated by 69 nucleotidesPsest_4072 and Psest_4073 are separated by 146 nucleotides Psest_4071: Psest_4071 - 4-hydroxyphenylpyruvate dioxygenase and related hemolysins, at 4,242,839 to 4,244,764 _4071 Psest_4072: Psest_4072 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 4,244,834 to 4,247,566 _4072 Psest_4073: Psest_4073 - Transcriptional regulator, at 4,247,713 to 4,248,645 _4073 Position (kb) 4244 4245 4246 4247 4248Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4244.045 kb on + strand, within Psest_4071at 4244.046 kb on - strand, within Psest_4071at 4244.046 kb on - strand, within Psest_4071at 4244.046 kb on - strand, within Psest_4071at 4244.652 kb on + strandat 4244.770 kb on + strandat 4244.958 kb on + strandat 4244.958 kb on + strandat 4244.959 kb on - strandat 4244.997 kb on + strandat 4244.998 kb on - strandat 4245.042 kb on + strandat 4245.042 kb on + strandat 4245.042 kb on + strandat 4245.042 kb on + strandat 4245.043 kb on - strandat 4245.043 kb on - strandat 4245.057 kb on + strandat 4245.057 kb on + strandat 4245.057 kb on + strandat 4245.057 kb on + strandat 4245.058 kb on - strandat 4245.058 kb on - strandat 4245.058 kb on - strandat 4245.058 kb on - strandat 4245.090 kb on + strandat 4245.112 kb on - strand, within Psest_4072at 4245.112 kb on - strand, within Psest_4072at 4245.288 kb on + strand, within Psest_4072at 4245.289 kb on - strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.304 kb on - strand, within Psest_4072at 4245.304 kb on - strand, within Psest_4072at 4245.304 kb on - strand, within Psest_4072at 4245.308 kb on - strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.777 kb on - strand, within Psest_4072at 4245.881 kb on + strand, within Psest_4072at 4245.993 kb on + strand, within Psest_4072at 4245.993 kb on + strand, within Psest_4072at 4245.993 kb on + strand, within Psest_4072at 4245.993 kb on + strand, within Psest_4072at 4245.993 kb on + strand, within Psest_4072at 4245.993 kb on + strand, within Psest_4072at 4245.993 kb on + strand, within Psest_4072at 4245.994 kb on - strand, within Psest_4072at 4245.994 kb on - strand, within Psest_4072at 4245.994 kb on - strand, within Psest_4072at 4245.994 kb on - strand, within Psest_4072at 4245.994 kb on - strand, within Psest_4072at 4245.994 kb on - strand, within Psest_4072at 4245.994 kb on - strand, within Psest_4072at 4245.994 kb on - strand, within Psest_4072at 4246.019 kb on + strand, within Psest_4072at 4246.020 kb on - strand, within Psest_4072at 4246.083 kb on + strand, within Psest_4072at 4246.083 kb on + strand, within Psest_4072at 4246.083 kb on + strand, within Psest_4072at 4246.083 kb on + strand, within Psest_4072at 4246.083 kb on + strand, within Psest_4072at 4246.084 kb on - strand, within Psest_4072at 4246.084 kb on - strand, within Psest_4072at 4246.084 kb on - strand, within Psest_4072at 4246.084 kb on - strand, within Psest_4072at 4246.084 kb on - strand, within Psest_4072at 4246.308 kb on + strand, within Psest_4072at 4246.308 kb on + strand, within Psest_4072at 4246.308 kb on + strand, within Psest_4072at 4246.309 kb on - strand, within Psest_4072at 4246.309 kb on - strand, within Psest_4072at 4246.398 kb on + strand, within Psest_4072at 4246.508 kb on + strand, within Psest_4072at 4246.740 kb on + strand, within Psest_4072at 4246.741 kb on - strand, within Psest_4072at 4246.863 kb on + strand, within Psest_4072at 4246.863 kb on + strand, within Psest_4072at 4246.863 kb on + strand, within Psest_4072at 4246.863 kb on + strand, within Psest_4072at 4246.864 kb on - strand, within Psest_4072at 4246.866 kb on + strand, within Psest_4072at 4246.866 kb on + strand, within Psest_4072at 4246.866 kb on + strand, within Psest_4072at 4247.312 kb on + strandat 4247.312 kb on + strandat 4247.312 kb on + strandat 4247.312 kb on + strandat 4247.313 kb on - strandat 4247.313 kb on - strandat 4247.313 kb on - strandat 4247.313 kb on - strandat 4247.313 kb on - strandat 4247.313 kb on - strandat 4247.514 kb on - strandat 4247.515 kb on + strandat 4247.515 kb on + strandat 4247.516 kb on - strandat 4247.579 kb on + strandat 4247.620 kb on - strandat 4247.675 kb on + strandat 4247.816 kb on + strand, within Psest_4073at 4248.197 kb on + strand, within Psest_4073

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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4,244,045 + Psest_4071 0.63 +0.6
4,244,046 - Psest_4071 0.63 +1.0
4,244,046 - Psest_4071 0.63 +1.7
4,244,046 - Psest_4071 0.63 +1.9
4,244,652 + +0.6
4,244,770 + +1.0
4,244,958 + +1.5
4,244,958 + +1.3
4,244,959 - +0.9
4,244,997 + -0.3
4,244,998 - +0.9
4,245,042 + -2.3
4,245,042 + +1.3
4,245,042 + +0.9
4,245,042 + +0.7
4,245,043 - +1.3
4,245,043 - +0.4
4,245,057 + +1.5
4,245,057 + -1.1
4,245,057 + +0.2
4,245,057 + +1.2
4,245,058 - +1.6
4,245,058 - +0.4
4,245,058 - +1.0
4,245,058 - +0.2
4,245,090 + -1.1
4,245,112 - Psest_4072 0.10 -0.4
4,245,112 - Psest_4072 0.10 -0.1
4,245,288 + Psest_4072 0.17 +1.1
4,245,289 - Psest_4072 0.17 +1.3
4,245,303 + Psest_4072 0.17 +1.4
4,245,303 + Psest_4072 0.17 +1.4
4,245,303 + Psest_4072 0.17 +1.1
4,245,303 + Psest_4072 0.17 -0.5
4,245,303 + Psest_4072 0.17 -1.5
4,245,303 + Psest_4072 0.17 -0.4
4,245,303 + Psest_4072 0.17 +1.2
4,245,303 + Psest_4072 0.17 +1.6
4,245,303 + Psest_4072 0.17 +1.8
4,245,303 + Psest_4072 0.17 +1.5
4,245,304 - Psest_4072 0.17 +2.2
4,245,304 - Psest_4072 0.17 +1.2
4,245,304 - Psest_4072 0.17 +0.6
4,245,308 - Psest_4072 0.17 +0.9
4,245,630 + Psest_4072 0.29 -0.1
4,245,630 + Psest_4072 0.29 -0.0
4,245,630 + Psest_4072 0.29 +0.5
4,245,630 + Psest_4072 0.29 +0.1
4,245,630 + Psest_4072 0.29 -1.0
4,245,630 + Psest_4072 0.29 +1.6
4,245,630 + Psest_4072 0.29 +0.6
4,245,630 + Psest_4072 0.29 +1.6
4,245,630 + Psest_4072 0.29 +0.3
4,245,630 + Psest_4072 0.29 +1.2
4,245,630 + Psest_4072 0.29 +0.9
4,245,630 + Psest_4072 0.29 -1.3
4,245,630 + Psest_4072 0.29 +0.6
4,245,631 - Psest_4072 0.29 +2.1
4,245,631 - Psest_4072 0.29 +1.2
4,245,631 - Psest_4072 0.29 -0.2
4,245,631 - Psest_4072 0.29 -0.7
4,245,631 - Psest_4072 0.29 +1.2
4,245,631 - Psest_4072 0.29 +3.3
4,245,631 - Psest_4072 0.29 -0.6
4,245,631 - Psest_4072 0.29 +1.9
4,245,631 - Psest_4072 0.29 +0.9
4,245,631 - Psest_4072 0.29 +0.4
4,245,631 - Psest_4072 0.29 +0.9
4,245,631 - Psest_4072 0.29 +0.5
4,245,631 - Psest_4072 0.29 +1.4
4,245,631 - Psest_4072 0.29 +0.6
4,245,631 - Psest_4072 0.29 +2.4
4,245,777 - Psest_4072 0.35 +1.0
4,245,881 + Psest_4072 0.38 +1.8
4,245,993 + Psest_4072 0.42 +1.2
4,245,993 + Psest_4072 0.42 +1.2
4,245,993 + Psest_4072 0.42 +2.1
4,245,993 + Psest_4072 0.42 -1.8
4,245,993 + Psest_4072 0.42 +2.4
4,245,993 + Psest_4072 0.42 +1.4
4,245,993 + Psest_4072 0.42 +1.1
4,245,994 - Psest_4072 0.42 +2.1
4,245,994 - Psest_4072 0.42 +1.0
4,245,994 - Psest_4072 0.42 +1.0
4,245,994 - Psest_4072 0.42 +0.7
4,245,994 - Psest_4072 0.42 +1.0
4,245,994 - Psest_4072 0.42 +0.5
4,245,994 - Psest_4072 0.42 +0.0
4,245,994 - Psest_4072 0.42 +1.3
4,246,019 + Psest_4072 0.43 +1.5
4,246,020 - Psest_4072 0.43 +0.7
4,246,083 + Psest_4072 0.46 +1.4
4,246,083 + Psest_4072 0.46 +1.1
4,246,083 + Psest_4072 0.46 +2.1
4,246,083 + Psest_4072 0.46 +2.6
4,246,083 + Psest_4072 0.46 +1.6
4,246,084 - Psest_4072 0.46 +0.5
4,246,084 - Psest_4072 0.46 +2.1
4,246,084 - Psest_4072 0.46 -1.0
4,246,084 - Psest_4072 0.46 -0.2
4,246,084 - Psest_4072 0.46 +0.2
4,246,308 + Psest_4072 0.54 +1.1
4,246,308 + Psest_4072 0.54 +0.5
4,246,308 + Psest_4072 0.54 -0.4
4,246,309 - Psest_4072 0.54 +0.8
4,246,309 - Psest_4072 0.54 +1.4
4,246,398 + Psest_4072 0.57 +0.4
4,246,508 + Psest_4072 0.61 +1.4
4,246,740 + Psest_4072 0.70 +2.8
4,246,741 - Psest_4072 0.70 +0.8
4,246,863 + Psest_4072 0.74 +0.8
4,246,863 + Psest_4072 0.74 +0.4
4,246,863 + Psest_4072 0.74 +1.1
4,246,863 + Psest_4072 0.74 +0.8
4,246,864 - Psest_4072 0.74 +2.9
4,246,866 + Psest_4072 0.74 -0.2
4,246,866 + Psest_4072 0.74 +0.2
4,246,866 + Psest_4072 0.74 -1.2
4,247,312 + +0.0
4,247,312 + +1.4
4,247,312 + +0.2
4,247,312 + +0.9
4,247,313 - +0.9
4,247,313 - +0.2
4,247,313 - +1.1
4,247,313 - +1.4
4,247,313 - +0.6
4,247,313 - -2.1
4,247,514 - +0.6
4,247,515 + +0.9
4,247,515 + +1.4
4,247,516 - -0.3
4,247,579 + -0.3
4,247,620 - -1.4
4,247,675 + +0.1
4,247,816 + Psest_4073 0.11 +0.8
4,248,197 + Psest_4073 0.52 +3.5

Or see this region's nucleotide sequence