Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0722

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0721 and Psest_0722 are separated by 91 nucleotidesPsest_0722 and Psest_0723 are separated by 153 nucleotides Psest_0721: Psest_0721 - tryptophanyl-tRNA synthetase, at 789,941 to 791,299 _0721 Psest_0722: Psest_0722 - Predicted ATPase, at 791,391 to 792,563 _0722 Psest_0723: Psest_0723 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 792,717 to 793,706 _0723 Position (kb) 791 792 793Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 791.405 kb on + strandat 791.565 kb on + strand, within Psest_0722at 791.565 kb on + strand, within Psest_0722at 791.655 kb on + strand, within Psest_0722at 791.655 kb on + strand, within Psest_0722at 791.655 kb on + strand, within Psest_0722at 791.655 kb on + strand, within Psest_0722at 791.655 kb on + strand, within Psest_0722at 791.655 kb on + strand, within Psest_0722at 791.655 kb on + strand, within Psest_0722at 791.655 kb on + strand, within Psest_0722at 791.655 kb on + strand, within Psest_0722at 791.656 kb on - strand, within Psest_0722at 791.656 kb on - strand, within Psest_0722at 791.656 kb on - strand, within Psest_0722at 791.656 kb on - strand, within Psest_0722at 791.656 kb on - strand, within Psest_0722at 791.688 kb on + strand, within Psest_0722at 791.700 kb on - strand, within Psest_0722at 791.976 kb on + strand, within Psest_0722at 791.976 kb on + strand, within Psest_0722at 791.977 kb on - strand, within Psest_0722at 791.977 kb on - strand, within Psest_0722at 792.300 kb on + strand, within Psest_0722at 792.300 kb on + strand, within Psest_0722at 792.300 kb on + strand, within Psest_0722at 792.300 kb on + strand, within Psest_0722at 792.300 kb on + strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.301 kb on - strand, within Psest_0722at 792.412 kb on - strand, within Psest_0722at 792.465 kb on + strandat 792.465 kb on + strandat 792.465 kb on + strandat 792.465 kb on + strandat 792.466 kb on - strandat 792.466 kb on - strandat 792.538 kb on - strandat 792.650 kb on - strandat 792.719 kb on - strandat 792.733 kb on + strandat 792.820 kb on + strand, within Psest_0723at 792.820 kb on + strand, within Psest_0723at 792.820 kb on + strand, within Psest_0723at 792.820 kb on + strand, within Psest_0723at 792.821 kb on - strand, within Psest_0723at 792.821 kb on - strand, within Psest_0723at 792.891 kb on + strand, within Psest_0723at 792.891 kb on + strand, within Psest_0723at 792.891 kb on + strand, within Psest_0723at 792.892 kb on - strand, within Psest_0723at 792.892 kb on - strand, within Psest_0723at 792.892 kb on - strand, within Psest_0723at 792.892 kb on - strand, within Psest_0723at 792.892 kb on - strand, within Psest_0723at 792.892 kb on - strand, within Psest_0723at 792.896 kb on - strand, within Psest_0723at 792.896 kb on - strand, within Psest_0723at 792.896 kb on - strand, within Psest_0723at 793.088 kb on - strand, within Psest_0723at 793.165 kb on + strand, within Psest_0723at 793.165 kb on + strand, within Psest_0723at 793.165 kb on + strand, within Psest_0723at 793.165 kb on + strand, within Psest_0723at 793.166 kb on - strand, within Psest_0723at 793.166 kb on - strand, within Psest_0723at 793.166 kb on - strand, within Psest_0723at 793.166 kb on - strand, within Psest_0723at 793.166 kb on - strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.171 kb on + strand, within Psest_0723at 793.172 kb on - strand, within Psest_0723at 793.172 kb on - strand, within Psest_0723at 793.172 kb on - strand, within Psest_0723at 793.172 kb on - strand, within Psest_0723at 793.172 kb on - strand, within Psest_0723at 793.172 kb on - strand, within Psest_0723at 793.208 kb on - strand, within Psest_0723

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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791,405 + +0.5
791,565 + Psest_0722 0.15 -1.8
791,565 + Psest_0722 0.15 -2.1
791,655 + Psest_0722 0.23 +0.8
791,655 + Psest_0722 0.23 -2.8
791,655 + Psest_0722 0.23 -1.8
791,655 + Psest_0722 0.23 -2.8
791,655 + Psest_0722 0.23 -1.9
791,655 + Psest_0722 0.23 -2.1
791,655 + Psest_0722 0.23 -1.4
791,655 + Psest_0722 0.23 -1.0
791,655 + Psest_0722 0.23 -0.5
791,656 - Psest_0722 0.23 -1.7
791,656 - Psest_0722 0.23 -2.5
791,656 - Psest_0722 0.23 -3.8
791,656 - Psest_0722 0.23 -1.4
791,656 - Psest_0722 0.23 -1.2
791,688 + Psest_0722 0.25 -1.0
791,700 - Psest_0722 0.26 -0.5
791,976 + Psest_0722 0.50 -1.2
791,976 + Psest_0722 0.50 -2.0
791,977 - Psest_0722 0.50 -1.8
791,977 - Psest_0722 0.50 -2.2
792,300 + Psest_0722 0.77 -0.8
792,300 + Psest_0722 0.77 -1.5
792,300 + Psest_0722 0.77 +0.5
792,300 + Psest_0722 0.77 -2.0
792,300 + Psest_0722 0.77 -1.8
792,301 - Psest_0722 0.78 -1.8
792,301 - Psest_0722 0.78 +0.2
792,301 - Psest_0722 0.78 +0.8
792,301 - Psest_0722 0.78 -3.0
792,301 - Psest_0722 0.78 -3.8
792,301 - Psest_0722 0.78 -1.7
792,301 - Psest_0722 0.78 -0.5
792,301 - Psest_0722 0.78 -0.8
792,412 - Psest_0722 0.87 -2.0
792,465 + -2.0
792,465 + -1.8
792,465 + -1.9
792,465 + -2.1
792,466 - -0.8
792,466 - +0.8
792,538 - -4.2
792,650 - -0.5
792,719 - -0.6
792,733 + -0.3
792,820 + Psest_0723 0.10 -0.8
792,820 + Psest_0723 0.10 -0.9
792,820 + Psest_0723 0.10 +1.7
792,820 + Psest_0723 0.10 -0.4
792,821 - Psest_0723 0.11 -2.1
792,821 - Psest_0723 0.11 -1.9
792,891 + Psest_0723 0.18 +1.1
792,891 + Psest_0723 0.18 -0.0
792,891 + Psest_0723 0.18 -0.2
792,892 - Psest_0723 0.18 -0.6
792,892 - Psest_0723 0.18 +0.5
792,892 - Psest_0723 0.18 -0.3
792,892 - Psest_0723 0.18 -0.2
792,892 - Psest_0723 0.18 -0.5
792,892 - Psest_0723 0.18 -0.0
792,896 - Psest_0723 0.18 -0.1
792,896 - Psest_0723 0.18 -1.4
792,896 - Psest_0723 0.18 -0.7
793,088 - Psest_0723 0.37 -1.2
793,165 + Psest_0723 0.45 +1.0
793,165 + Psest_0723 0.45 +1.0
793,165 + Psest_0723 0.45 +0.5
793,165 + Psest_0723 0.45 -2.6
793,166 - Psest_0723 0.45 -0.6
793,166 - Psest_0723 0.45 +0.0
793,166 - Psest_0723 0.45 +1.7
793,166 - Psest_0723 0.45 +0.2
793,166 - Psest_0723 0.45 +0.4
793,171 + Psest_0723 0.46 -0.1
793,171 + Psest_0723 0.46 +0.1
793,171 + Psest_0723 0.46 +0.4
793,171 + Psest_0723 0.46 -1.0
793,171 + Psest_0723 0.46 -0.1
793,171 + Psest_0723 0.46 -0.1
793,171 + Psest_0723 0.46 -0.3
793,171 + Psest_0723 0.46 +2.3
793,171 + Psest_0723 0.46 +0.3
793,171 + Psest_0723 0.46 -0.1
793,171 + Psest_0723 0.46 +0.3
793,171 + Psest_0723 0.46 -0.2
793,171 + Psest_0723 0.46 -0.0
793,171 + Psest_0723 0.46 +2.0
793,171 + Psest_0723 0.46 -0.3
793,171 + Psest_0723 0.46 +0.2
793,171 + Psest_0723 0.46 +0.7
793,171 + Psest_0723 0.46 -0.7
793,172 - Psest_0723 0.46 -0.4
793,172 - Psest_0723 0.46 -1.9
793,172 - Psest_0723 0.46 -0.5
793,172 - Psest_0723 0.46 +0.8
793,172 - Psest_0723 0.46 -1.1
793,172 - Psest_0723 0.46 +0.1
793,208 - Psest_0723 0.50 -0.3

Or see this region's nucleotide sequence