Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4268

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4267 and Psest_4268 are separated by 344 nucleotidesPsest_4268 and Psest_4269 are separated by 261 nucleotidesPsest_4269 and Psest_4270 overlap by 1 nucleotides Psest_4267: Psest_4267 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 4,456,998 to 4,458,392 _4267 Psest_4268: Psest_4268 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 4,458,737 to 4,459,732 _4268 Psest_4269: Psest_4269 - C4-dicarboxylate transporter, DctQ subunit (from data), at 4,459,994 to 4,460,620 _4269 Psest_4270: Psest_4270 - TRAP transporter, DctM subunit, at 4,460,620 to 4,461,900 _4270 Position (kb) 4458 4459 4460Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4457.925 kb on + strand, within Psest_4267at 4457.925 kb on + strand, within Psest_4267at 4457.925 kb on + strand, within Psest_4267at 4457.926 kb on - strand, within Psest_4267at 4457.926 kb on - strand, within Psest_4267at 4458.390 kb on + strandat 4458.390 kb on + strandat 4458.390 kb on + strandat 4458.390 kb on + strandat 4458.391 kb on - strandat 4458.391 kb on - strandat 4458.391 kb on - strandat 4458.464 kb on + strandat 4458.505 kb on - strandat 4458.505 kb on - strandat 4458.669 kb on + strandat 4458.669 kb on + strandat 4458.921 kb on + strand, within Psest_4268at 4458.921 kb on + strand, within Psest_4268at 4458.922 kb on - strand, within Psest_4268at 4459.028 kb on + strand, within Psest_4268at 4459.028 kb on + strand, within Psest_4268at 4459.029 kb on - strand, within Psest_4268at 4459.029 kb on - strand, within Psest_4268at 4459.029 kb on - strand, within Psest_4268at 4459.049 kb on + strand, within Psest_4268at 4459.050 kb on - strand, within Psest_4268at 4459.050 kb on - strand, within Psest_4268at 4459.050 kb on - strand, within Psest_4268at 4459.050 kb on - strand, within Psest_4268at 4459.050 kb on - strand, within Psest_4268at 4459.323 kb on - strand, within Psest_4268at 4459.379 kb on + strand, within Psest_4268at 4459.379 kb on + strand, within Psest_4268at 4459.379 kb on + strand, within Psest_4268at 4459.379 kb on + strand, within Psest_4268at 4459.379 kb on + strand, within Psest_4268at 4459.379 kb on + strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.443 kb on - strand, within Psest_4268at 4459.443 kb on - strand, within Psest_4268at 4459.443 kb on - strand, within Psest_4268at 4459.443 kb on - strand, within Psest_4268at 4459.726 kb on + strandat 4459.730 kb on + strandat 4459.730 kb on + strandat 4459.730 kb on + strandat 4459.730 kb on + strandat 4459.730 kb on + strandat 4459.730 kb on + strandat 4459.730 kb on + strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.806 kb on + strandat 4459.806 kb on + strandat 4459.807 kb on - strandat 4460.039 kb on - strandat 4460.081 kb on + strand, within Psest_4269at 4460.081 kb on + strand, within Psest_4269at 4460.081 kb on + strand, within Psest_4269at 4460.081 kb on + strand, within Psest_4269at 4460.081 kb on + strand, within Psest_4269at 4460.082 kb on - strand, within Psest_4269at 4460.082 kb on - strand, within Psest_4269at 4460.082 kb on - strand, within Psest_4269at 4460.082 kb on - strand, within Psest_4269at 4460.082 kb on - strand, within Psest_4269at 4460.082 kb on - strand, within Psest_4269at 4460.102 kb on + strand, within Psest_4269at 4460.102 kb on + strand, within Psest_4269at 4460.102 kb on + strand, within Psest_4269at 4460.103 kb on - strand, within Psest_4269at 4460.103 kb on - strand, within Psest_4269at 4460.103 kb on - strand, within Psest_4269at 4460.114 kb on + strand, within Psest_4269at 4460.114 kb on + strand, within Psest_4269at 4460.114 kb on + strand, within Psest_4269at 4460.114 kb on + strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.471 kb on - strand, within Psest_4269at 4460.537 kb on - strand, within Psest_4269at 4460.618 kb on + strandat 4460.618 kb on + strandat 4460.619 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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4,457,925 + Psest_4267 0.66 -2.6
4,457,925 + Psest_4267 0.66 -4.5
4,457,925 + Psest_4267 0.66 -5.0
4,457,926 - Psest_4267 0.67 -1.9
4,457,926 - Psest_4267 0.67 -4.3
4,458,390 + -0.6
4,458,390 + -3.8
4,458,390 + -3.2
4,458,390 + -1.4
4,458,391 - -1.3
4,458,391 - -1.7
4,458,391 - -3.0
4,458,464 + -3.0
4,458,505 - -3.2
4,458,505 - -3.6
4,458,669 + +1.2
4,458,669 + +0.4
4,458,921 + Psest_4268 0.18 -2.6
4,458,921 + Psest_4268 0.18 -2.5
4,458,922 - Psest_4268 0.19 -4.8
4,459,028 + Psest_4268 0.29 -0.6
4,459,028 + Psest_4268 0.29 -2.9
4,459,029 - Psest_4268 0.29 -3.2
4,459,029 - Psest_4268 0.29 -2.6
4,459,029 - Psest_4268 0.29 -3.6
4,459,049 + Psest_4268 0.31 -1.7
4,459,050 - Psest_4268 0.31 -3.9
4,459,050 - Psest_4268 0.31 -2.3
4,459,050 - Psest_4268 0.31 -3.6
4,459,050 - Psest_4268 0.31 -3.6
4,459,050 - Psest_4268 0.31 -4.0
4,459,323 - Psest_4268 0.59 -1.7
4,459,379 + Psest_4268 0.64 -3.3
4,459,379 + Psest_4268 0.64 -2.0
4,459,379 + Psest_4268 0.64 -2.3
4,459,379 + Psest_4268 0.64 -5.2
4,459,379 + Psest_4268 0.64 -3.7
4,459,379 + Psest_4268 0.64 -2.8
4,459,380 - Psest_4268 0.65 -2.1
4,459,380 - Psest_4268 0.65 -2.5
4,459,380 - Psest_4268 0.65 -2.6
4,459,380 - Psest_4268 0.65 -3.0
4,459,380 - Psest_4268 0.65 -3.8
4,459,380 - Psest_4268 0.65 -2.9
4,459,380 - Psest_4268 0.65 -3.3
4,459,409 + Psest_4268 0.67 -2.8
4,459,409 + Psest_4268 0.67 -2.3
4,459,409 + Psest_4268 0.67 -1.5
4,459,409 + Psest_4268 0.67 -3.1
4,459,409 + Psest_4268 0.67 -1.6
4,459,409 + Psest_4268 0.67 -4.4
4,459,409 + Psest_4268 0.67 -3.0
4,459,409 + Psest_4268 0.67 -1.3
4,459,410 - Psest_4268 0.68 -4.7
4,459,410 - Psest_4268 0.68 -3.7
4,459,410 - Psest_4268 0.68 -4.8
4,459,410 - Psest_4268 0.68 -2.5
4,459,410 - Psest_4268 0.68 -3.4
4,459,410 - Psest_4268 0.68 -4.1
4,459,410 - Psest_4268 0.68 -4.0
4,459,410 - Psest_4268 0.68 -3.8
4,459,410 - Psest_4268 0.68 -3.7
4,459,410 - Psest_4268 0.68 -3.1
4,459,443 - Psest_4268 0.71 -2.5
4,459,443 - Psest_4268 0.71 -2.9
4,459,443 - Psest_4268 0.71 -3.7
4,459,443 - Psest_4268 0.71 -3.4
4,459,726 + +0.2
4,459,730 + -2.9
4,459,730 + -2.7
4,459,730 + -0.6
4,459,730 + -1.7
4,459,730 + -1.5
4,459,730 + -1.3
4,459,730 + -1.3
4,459,731 - -3.8
4,459,731 - -3.3
4,459,731 - -2.9
4,459,731 - -3.4
4,459,731 - -2.6
4,459,731 - -4.8
4,459,731 - -3.1
4,459,731 - -4.2
4,459,731 - +0.4
4,459,731 - -2.6
4,459,731 - -4.2
4,459,731 - -2.4
4,459,806 + -1.2
4,459,806 + -2.6
4,459,807 - -3.0
4,460,039 - -2.0
4,460,081 + Psest_4269 0.14 -3.0
4,460,081 + Psest_4269 0.14 -2.5
4,460,081 + Psest_4269 0.14 -3.6
4,460,081 + Psest_4269 0.14 -2.2
4,460,081 + Psest_4269 0.14 -4.4
4,460,082 - Psest_4269 0.14 -3.0
4,460,082 - Psest_4269 0.14 -2.8
4,460,082 - Psest_4269 0.14 -4.2
4,460,082 - Psest_4269 0.14 -4.1
4,460,082 - Psest_4269 0.14 -4.5
4,460,082 - Psest_4269 0.14 -2.3
4,460,102 + Psest_4269 0.17 -2.3
4,460,102 + Psest_4269 0.17 -1.8
4,460,102 + Psest_4269 0.17 -3.0
4,460,103 - Psest_4269 0.17 -3.0
4,460,103 - Psest_4269 0.17 -3.5
4,460,103 - Psest_4269 0.17 -5.0
4,460,114 + Psest_4269 0.19 -0.8
4,460,114 + Psest_4269 0.19 -1.6
4,460,114 + Psest_4269 0.19 -3.1
4,460,114 + Psest_4269 0.19 -2.7
4,460,115 - Psest_4269 0.19 -3.0
4,460,115 - Psest_4269 0.19 -4.1
4,460,115 - Psest_4269 0.19 -6.3
4,460,115 - Psest_4269 0.19 -4.0
4,460,115 - Psest_4269 0.19 -3.6
4,460,115 - Psest_4269 0.19 -1.7
4,460,115 - Psest_4269 0.19 -3.0
4,460,115 - Psest_4269 0.19 -4.7
4,460,115 - Psest_4269 0.19 -5.2
4,460,115 - Psest_4269 0.19 -2.5
4,460,471 - Psest_4269 0.76 -2.6
4,460,537 - Psest_4269 0.87 -0.6
4,460,618 + -4.0
4,460,618 + -2.1
4,460,619 - -3.4

Or see this region's nucleotide sequence