Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1259 and Psest_1260 are separated by 11 nucleotides Psest_1260 and Psest_1261 overlap by 4 nucleotides
Psest_1259: Psest_1259 - 23S rRNA m2A2503 methyltransferase, at 1,363,907 to 1,365,055
_1259
Psest_1260: Psest_1260 - type IV pilus biogenesis/stability protein PilW, at 1,365,067 to 1,365,825
_1260
Psest_1261: Psest_1261 - Uncharacterized protein conserved in bacteria, at 1,365,822 to 1,366,832
_1261
Position (kb)
1365
1366 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1364.166 kb on + strand, within Psest_1259 at 1364.201 kb on + strand, within Psest_1259 at 1364.201 kb on + strand, within Psest_1259 at 1364.201 kb on + strand, within Psest_1259 at 1364.201 kb on + strand, within Psest_1259 at 1364.201 kb on + strand, within Psest_1259 at 1364.201 kb on + strand, within Psest_1259 at 1364.201 kb on + strand, within Psest_1259 at 1364.201 kb on + strand, within Psest_1259 at 1364.229 kb on + strand, within Psest_1259 at 1364.229 kb on + strand, within Psest_1259 at 1364.299 kb on + strand, within Psest_1259 at 1364.458 kb on + strand, within Psest_1259 at 1364.458 kb on + strand, within Psest_1259 at 1364.485 kb on + strand, within Psest_1259 at 1364.593 kb on + strand, within Psest_1259 at 1364.633 kb on + strand, within Psest_1259 at 1364.644 kb on + strand, within Psest_1259 at 1364.644 kb on + strand, within Psest_1259 at 1364.644 kb on + strand, within Psest_1259 at 1364.669 kb on + strand, within Psest_1259 at 1364.671 kb on + strand, within Psest_1259 at 1364.990 kb on + strand at 1364.990 kb on + strand at 1364.990 kb on + strand at 1364.990 kb on + strand at 1364.990 kb on + strand at 1365.009 kb on + strand at 1365.009 kb on + strand at 1365.095 kb on + strand at 1365.095 kb on + strand at 1365.095 kb on + strand at 1365.184 kb on + strand, within Psest_1260 at 1365.184 kb on + strand, within Psest_1260 at 1365.184 kb on + strand, within Psest_1260 at 1365.184 kb on + strand, within Psest_1260 at 1365.184 kb on + strand, within Psest_1260 at 1365.186 kb on + strand, within Psest_1260 at 1365.394 kb on + strand, within Psest_1260 at 1365.394 kb on + strand, within Psest_1260 at 1365.472 kb on + strand, within Psest_1260 at 1365.472 kb on + strand, within Psest_1260 at 1365.472 kb on + strand, within Psest_1260 at 1365.555 kb on + strand, within Psest_1260 at 1365.634 kb on + strand, within Psest_1260 at 1365.634 kb on + strand, within Psest_1260 at 1365.634 kb on + strand, within Psest_1260 at 1365.634 kb on + strand, within Psest_1260 at 1365.655 kb on + strand, within Psest_1260 at 1365.805 kb on + strand at 1365.805 kb on + strand at 1365.998 kb on + strand, within Psest_1261 at 1365.998 kb on + strand, within Psest_1261 at 1365.998 kb on + strand, within Psest_1261 at 1365.998 kb on + strand, within Psest_1261 at 1365.998 kb on + strand, within Psest_1261 at 1365.998 kb on + strand, within Psest_1261 at 1365.998 kb on + strand, within Psest_1261 at 1365.998 kb on + strand, within Psest_1261 at 1365.998 kb on + strand, within Psest_1261 at 1365.998 kb on + strand, within Psest_1261 at 1365.998 kb on + strand, within Psest_1261 at 1365.998 kb on + strand, within Psest_1261 at 1366.183 kb on + strand, within Psest_1261 at 1366.726 kb on + strand, within Psest_1261 at 1366.726 kb on + strand, within Psest_1261 at 1366.726 kb on + strand, within Psest_1261 at 1366.726 kb on + strand, within Psest_1261 at 1366.726 kb on + strand, within Psest_1261 at 1366.726 kb on + strand, within Psest_1261 at 1366.726 kb on + strand, within Psest_1261 at 1366.761 kb on + strand at 1366.761 kb on + strand at 1366.761 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,364,166 + Psest_1259 0.23 -1.7 1,364,201 + Psest_1259 0.26 -2.2 1,364,201 + Psest_1259 0.26 -0.4 1,364,201 + Psest_1259 0.26 -0.5 1,364,201 + Psest_1259 0.26 +2.3 1,364,201 + Psest_1259 0.26 +2.3 1,364,201 + Psest_1259 0.26 -2.3 1,364,201 + Psest_1259 0.26 -1.9 1,364,201 + Psest_1259 0.26 +0.3 1,364,229 + Psest_1259 0.28 -0.7 1,364,229 + Psest_1259 0.28 -2.7 1,364,299 + Psest_1259 0.34 -1.4 1,364,458 + Psest_1259 0.48 +0.4 1,364,458 + Psest_1259 0.48 +0.9 1,364,485 + Psest_1259 0.50 -0.8 1,364,593 + Psest_1259 0.60 +0.8 1,364,633 + Psest_1259 0.63 +0.3 1,364,644 + Psest_1259 0.64 -1.2 1,364,644 + Psest_1259 0.64 -0.9 1,364,644 + Psest_1259 0.64 +0.9 1,364,669 + Psest_1259 0.66 -1.0 1,364,671 + Psest_1259 0.66 -1.0 1,364,990 + +1.1 1,364,990 + -1.3 1,364,990 + -1.1 1,364,990 + +0.5 1,364,990 + -0.4 1,365,009 + -0.3 1,365,009 + -0.2 1,365,095 + -2.3 1,365,095 + -1.7 1,365,095 + -1.2 1,365,184 + Psest_1260 0.15 -0.9 1,365,184 + Psest_1260 0.15 -1.6 1,365,184 + Psest_1260 0.15 -1.1 1,365,184 + Psest_1260 0.15 -2.1 1,365,184 + Psest_1260 0.15 -0.3 1,365,186 + Psest_1260 0.16 -0.1 1,365,394 + Psest_1260 0.43 -1.1 1,365,394 + Psest_1260 0.43 -1.9 1,365,472 + Psest_1260 0.53 -1.6 1,365,472 + Psest_1260 0.53 -1.5 1,365,472 + Psest_1260 0.53 -1.5 1,365,555 + Psest_1260 0.64 -1.7 1,365,634 + Psest_1260 0.75 -1.8 1,365,634 + Psest_1260 0.75 -2.1 1,365,634 + Psest_1260 0.75 -4.3 1,365,634 + Psest_1260 0.75 -0.4 1,365,655 + Psest_1260 0.77 -1.2 1,365,805 + +0.6 1,365,805 + -0.5 1,365,998 + Psest_1261 0.17 +1.2 1,365,998 + Psest_1261 0.17 -1.8 1,365,998 + Psest_1261 0.17 +0.8 1,365,998 + Psest_1261 0.17 -1.3 1,365,998 + Psest_1261 0.17 -2.1 1,365,998 + Psest_1261 0.17 -0.8 1,365,998 + Psest_1261 0.17 -0.8 1,365,998 + Psest_1261 0.17 -1.1 1,365,998 + Psest_1261 0.17 -1.1 1,365,998 + Psest_1261 0.17 +2.2 1,365,998 + Psest_1261 0.17 -0.5 1,365,998 + Psest_1261 0.17 +0.2 1,366,183 + Psest_1261 0.36 -0.8 1,366,726 + Psest_1261 0.89 +1.1 1,366,726 + Psest_1261 0.89 -0.3 1,366,726 + Psest_1261 0.89 -0.7 1,366,726 + Psest_1261 0.89 -0.3 1,366,726 + Psest_1261 0.89 +0.2 1,366,726 + Psest_1261 0.89 -0.1 1,366,726 + Psest_1261 0.89 +0.7 1,366,761 + -0.4 1,366,761 + +0.5 1,366,761 + +1.3
Or see this region's nucleotide sequence