Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0490 and Psest_0491 are separated by 139 nucleotides Psest_0491 and Psest_0492 are separated by 61 nucleotides
Psest_0490: Psest_0490 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 542,287 to 543,360
_0490
Psest_0491: Psest_0491 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 543,500 to 545,566
_0491
Psest_0492: Psest_0492 - hypothetical protein, at 545,628 to 547,469
_0492
Position (kb) 543
544
545
546 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 542.531 kb on + strand, within Psest_0490 at 542.665 kb on + strand, within Psest_0490 at 542.665 kb on + strand, within Psest_0490 at 542.665 kb on + strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.966 kb on + strand, within Psest_0490 at 542.966 kb on + strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 543.077 kb on + strand, within Psest_0490 at 543.077 kb on + strand, within Psest_0490 at 543.078 kb on - strand, within Psest_0490 at 543.331 kb on + strand at 543.400 kb on + strand at 543.401 kb on - strand at 543.501 kb on + strand at 543.501 kb on + strand at 543.502 kb on - strand at 543.502 kb on - strand at 543.502 kb on - strand at 543.556 kb on - strand at 543.570 kb on + strand at 543.570 kb on + strand at 543.570 kb on + strand at 543.570 kb on + strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.714 kb on + strand, within Psest_0491 at 543.714 kb on + strand, within Psest_0491 at 543.760 kb on + strand, within Psest_0491 at 544.293 kb on + strand, within Psest_0491 at 544.293 kb on + strand, within Psest_0491 at 544.293 kb on + strand, within Psest_0491 at 544.293 kb on + strand, within Psest_0491 at 544.294 kb on - strand, within Psest_0491 at 544.294 kb on - strand, within Psest_0491 at 544.294 kb on - strand, within Psest_0491 at 544.294 kb on - strand, within Psest_0491 at 544.515 kb on - strand, within Psest_0491 at 544.622 kb on + strand, within Psest_0491 at 544.622 kb on + strand, within Psest_0491 at 544.622 kb on + strand, within Psest_0491 at 544.623 kb on - strand, within Psest_0491 at 544.662 kb on + strand, within Psest_0491 at 544.662 kb on + strand, within Psest_0491 at 544.662 kb on + strand, within Psest_0491 at 544.663 kb on - strand, within Psest_0491 at 544.944 kb on + strand, within Psest_0491 at 544.944 kb on + strand, within Psest_0491 at 544.944 kb on + strand, within Psest_0491 at 544.945 kb on - strand, within Psest_0491 at 544.945 kb on - strand, within Psest_0491 at 544.945 kb on - strand, within Psest_0491 at 545.052 kb on + strand, within Psest_0491 at 545.053 kb on - strand, within Psest_0491 at 545.067 kb on + strand, within Psest_0491 at 545.068 kb on - strand, within Psest_0491 at 545.068 kb on - strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.071 kb on + strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.072 kb on - strand, within Psest_0491 at 545.077 kb on + strand, within Psest_0491 at 545.091 kb on + strand, within Psest_0491 at 545.092 kb on - strand, within Psest_0491 at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.577 kb on + strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.578 kb on - strand at 545.629 kb on + strand at 545.629 kb on + strand at 545.630 kb on - strand at 545.630 kb on - strand at 545.630 kb on - strand at 545.752 kb on + strand at 545.752 kb on + strand at 545.752 kb on + strand at 545.752 kb on + strand at 545.752 kb on + strand at 545.752 kb on + strand at 545.752 kb on + strand at 545.753 kb on - strand at 545.753 kb on - strand at 545.753 kb on - strand at 546.093 kb on + strand, within Psest_0492 at 546.093 kb on + strand, within Psest_0492 at 546.094 kb on - strand, within Psest_0492 at 546.094 kb on - strand, within Psest_0492 at 546.094 kb on - strand, within Psest_0492 at 546.105 kb on + strand, within Psest_0492 at 546.105 kb on + strand, within Psest_0492 at 546.106 kb on - strand, within Psest_0492 at 546.166 kb on + strand, within Psest_0492 at 546.166 kb on + strand, within Psest_0492 at 546.166 kb on + strand, within Psest_0492 at 546.167 kb on - strand, within Psest_0492 at 546.167 kb on - strand, within Psest_0492 at 546.192 kb on - strand, within Psest_0492 at 546.434 kb on - strand, within Psest_0492 at 546.456 kb on - strand, within Psest_0492
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 542,531 + Psest_0490 0.23 -0.4 542,665 + Psest_0490 0.35 +0.8 542,665 + Psest_0490 0.35 -0.4 542,665 + Psest_0490 0.35 +0.1 542,666 - Psest_0490 0.35 +0.5 542,666 - Psest_0490 0.35 +0.8 542,666 - Psest_0490 0.35 +0.6 542,666 - Psest_0490 0.35 +1.1 542,666 - Psest_0490 0.35 +0.4 542,666 - Psest_0490 0.35 +0.5 542,966 + Psest_0490 0.63 +1.3 542,966 + Psest_0490 0.63 -0.7 542,967 - Psest_0490 0.63 -0.3 542,967 - Psest_0490 0.63 +2.1 542,967 - Psest_0490 0.63 +0.1 542,967 - Psest_0490 0.63 +0.6 542,967 - Psest_0490 0.63 +0.2 543,077 + Psest_0490 0.74 -1.0 543,077 + Psest_0490 0.74 -2.0 543,078 - Psest_0490 0.74 +0.4 543,331 + -0.6 543,400 + -1.2 543,401 - -0.2 543,501 + +0.5 543,501 + +0.4 543,502 - +0.4 543,502 - +0.9 543,502 - -0.5 543,556 - -1.4 543,570 + -1.7 543,570 + -0.7 543,570 + -0.1 543,570 + -2.9 543,571 - -2.2 543,571 - -2.5 543,571 - -3.6 543,571 - -1.5 543,571 - -1.1 543,571 - -2.9 543,714 + Psest_0491 0.10 -3.1 543,714 + Psest_0491 0.10 -2.0 543,760 + Psest_0491 0.13 -2.2 544,293 + Psest_0491 0.38 -2.9 544,293 + Psest_0491 0.38 -2.1 544,293 + Psest_0491 0.38 +0.0 544,293 + Psest_0491 0.38 -1.3 544,294 - Psest_0491 0.38 -1.2 544,294 - Psest_0491 0.38 -1.4 544,294 - Psest_0491 0.38 -2.7 544,294 - Psest_0491 0.38 -1.9 544,515 - Psest_0491 0.49 -2.5 544,622 + Psest_0491 0.54 -0.5 544,622 + Psest_0491 0.54 -0.5 544,622 + Psest_0491 0.54 -2.2 544,623 - Psest_0491 0.54 -2.7 544,662 + Psest_0491 0.56 -1.6 544,662 + Psest_0491 0.56 +0.4 544,662 + Psest_0491 0.56 -0.9 544,663 - Psest_0491 0.56 -0.2 544,944 + Psest_0491 0.70 -1.2 544,944 + Psest_0491 0.70 -0.4 544,944 + Psest_0491 0.70 -2.0 544,945 - Psest_0491 0.70 -2.5 544,945 - Psest_0491 0.70 -2.3 544,945 - Psest_0491 0.70 -2.0 545,052 + Psest_0491 0.75 -2.7 545,053 - Psest_0491 0.75 -1.1 545,067 + Psest_0491 0.76 -1.3 545,068 - Psest_0491 0.76 -0.6 545,068 - Psest_0491 0.76 -1.4 545,071 + Psest_0491 0.76 -0.2 545,071 + Psest_0491 0.76 -1.0 545,071 + Psest_0491 0.76 -1.5 545,071 + Psest_0491 0.76 -1.9 545,071 + Psest_0491 0.76 -1.9 545,071 + Psest_0491 0.76 -2.8 545,071 + Psest_0491 0.76 -1.6 545,071 + Psest_0491 0.76 -2.0 545,071 + Psest_0491 0.76 -0.2 545,071 + Psest_0491 0.76 -1.9 545,071 + Psest_0491 0.76 -3.4 545,071 + Psest_0491 0.76 -1.5 545,071 + Psest_0491 0.76 -0.5 545,071 + Psest_0491 0.76 -2.1 545,071 + Psest_0491 0.76 -1.6 545,071 + Psest_0491 0.76 -1.8 545,071 + Psest_0491 0.76 +0.0 545,071 + Psest_0491 0.76 -1.8 545,071 + Psest_0491 0.76 -1.6 545,072 - Psest_0491 0.76 -2.7 545,072 - Psest_0491 0.76 -3.2 545,072 - Psest_0491 0.76 +1.1 545,072 - Psest_0491 0.76 -0.7 545,072 - Psest_0491 0.76 -1.1 545,072 - Psest_0491 0.76 -0.9 545,072 - Psest_0491 0.76 -1.5 545,072 - Psest_0491 0.76 -3.2 545,072 - Psest_0491 0.76 -2.1 545,072 - Psest_0491 0.76 -1.0 545,072 - Psest_0491 0.76 -2.9 545,072 - Psest_0491 0.76 +1.5 545,077 + Psest_0491 0.76 +1.0 545,091 + Psest_0491 0.77 -0.3 545,092 - Psest_0491 0.77 -0.5 545,577 + -0.9 545,577 + -1.0 545,577 + -0.7 545,577 + -1.4 545,577 + -0.4 545,577 + -1.4 545,577 + +2.7 545,577 + -1.1 545,577 + -3.6 545,577 + -2.2 545,577 + -1.0 545,578 - -0.7 545,578 - -0.6 545,578 - -1.2 545,578 - +0.3 545,578 - -1.7 545,578 - -0.5 545,578 - +0.2 545,578 - +0.2 545,629 + -0.8 545,629 + -2.8 545,630 - +2.3 545,630 - -1.2 545,630 - +0.6 545,752 + +0.2 545,752 + +0.6 545,752 + +1.2 545,752 + +0.4 545,752 + +0.5 545,752 + +0.8 545,752 + +1.6 545,753 - -2.1 545,753 - +0.2 545,753 - +0.2 546,093 + Psest_0492 0.25 +0.2 546,093 + Psest_0492 0.25 -0.4 546,094 - Psest_0492 0.25 +0.2 546,094 - Psest_0492 0.25 -0.3 546,094 - Psest_0492 0.25 +0.7 546,105 + Psest_0492 0.26 -0.0 546,105 + Psest_0492 0.26 +0.0 546,106 - Psest_0492 0.26 -0.4 546,166 + Psest_0492 0.29 +0.5 546,166 + Psest_0492 0.29 +0.1 546,166 + Psest_0492 0.29 +0.4 546,167 - Psest_0492 0.29 -0.1 546,167 - Psest_0492 0.29 -1.4 546,192 - Psest_0492 0.31 -1.4 546,434 - Psest_0492 0.44 -1.2 546,456 - Psest_0492 0.45 -0.4
Or see this region's nucleotide sequence