Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4220

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4219 and Psest_4220 are separated by 76 nucleotidesPsest_4220 and Psest_4221 are separated by 24 nucleotides Psest_4219: Psest_4219 - DNA polymerase I, at 4,398,105 to 4,400,849 _4219 Psest_4220: Psest_4220 - Protein of unknown function (DUF2782)., at 4,400,926 to 4,401,210 _4220 Psest_4221: Psest_4221 - homoserine kinase, Neisseria type, at 4,401,235 to 4,402,188 _4221 Position (kb) 4400 4401 4402Strain fitness (log2 ratio) -1 0 1at 4400.883 kb on + strandat 4400.884 kb on - strandat 4400.922 kb on + strandat 4401.020 kb on + strand, within Psest_4220at 4401.079 kb on + strand, within Psest_4220at 4401.208 kb on + strandat 4401.376 kb on + strand, within Psest_4221at 4401.376 kb on + strand, within Psest_4221at 4401.377 kb on - strand, within Psest_4221at 4401.377 kb on - strand, within Psest_4221at 4401.865 kb on + strand, within Psest_4221at 4401.866 kb on - strand, within Psest_4221at 4401.866 kb on - strand, within Psest_4221at 4401.866 kb on - strand, within Psest_4221at 4401.893 kb on - strand, within Psest_4221at 4401.979 kb on + strand, within Psest_4221at 4402.172 kb on + strandat 4402.173 kb on - strandat 4402.173 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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4,400,883 + +0.1
4,400,884 - -1.2
4,400,922 + +0.3
4,401,020 + Psest_4220 0.33 +0.8
4,401,079 + Psest_4220 0.54 +0.3
4,401,208 + +0.7
4,401,376 + Psest_4221 0.15 -0.6
4,401,376 + Psest_4221 0.15 +0.7
4,401,377 - Psest_4221 0.15 -0.7
4,401,377 - Psest_4221 0.15 +1.0
4,401,865 + Psest_4221 0.66 +0.8
4,401,866 - Psest_4221 0.66 +0.7
4,401,866 - Psest_4221 0.66 -0.5
4,401,866 - Psest_4221 0.66 +1.5
4,401,893 - Psest_4221 0.69 +0.3
4,401,979 + Psest_4221 0.78 +1.0
4,402,172 + -1.0
4,402,173 - +0.1
4,402,173 - -0.9

Or see this region's nucleotide sequence