Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4056

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4055 and Psest_4056 are separated by 77 nucleotidesPsest_4056 and Psest_4057 are separated by 16 nucleotidesPsest_4057 and Psest_4058 are separated by 47 nucleotides Psest_4055: Psest_4055 - ABC transporter, substrate-binding protein, aliphatic sulfonates family, at 4,228,075 to 4,229,040 _4055 Psest_4056: Psest_4056 - FMN reductase, SsuE family, at 4,229,118 to 4,229,732 _4056 Psest_4057: Psest_4057 - Peroxiredoxin, at 4,229,749 to 4,230,387 _4057 Psest_4058: Psest_4058 - Predicted esterase of the alpha/beta hydrolase fold, at 4,230,435 to 4,231,010 _4058 Position (kb) 4229 4230Strain fitness (log2 ratio) -2 -1 0 1 2at 4228.400 kb on + strand, within Psest_4055at 4228.401 kb on - strand, within Psest_4055at 4228.401 kb on - strand, within Psest_4055at 4228.401 kb on - strand, within Psest_4055at 4228.401 kb on - strand, within Psest_4055at 4228.453 kb on + strand, within Psest_4055at 4228.454 kb on - strand, within Psest_4055at 4228.454 kb on - strand, within Psest_4055at 4228.550 kb on + strand, within Psest_4055at 4228.550 kb on + strand, within Psest_4055at 4228.550 kb on + strand, within Psest_4055at 4228.550 kb on + strand, within Psest_4055at 4228.551 kb on - strand, within Psest_4055at 4228.551 kb on - strand, within Psest_4055at 4228.571 kb on + strand, within Psest_4055at 4228.571 kb on + strand, within Psest_4055at 4228.571 kb on + strand, within Psest_4055at 4228.571 kb on + strand, within Psest_4055at 4228.572 kb on - strand, within Psest_4055at 4228.610 kb on + strand, within Psest_4055at 4228.610 kb on + strand, within Psest_4055at 4228.610 kb on + strand, within Psest_4055at 4228.736 kb on + strand, within Psest_4055at 4228.736 kb on + strand, within Psest_4055at 4228.736 kb on + strand, within Psest_4055at 4228.737 kb on - strand, within Psest_4055at 4228.737 kb on - strand, within Psest_4055at 4228.737 kb on - strand, within Psest_4055at 4228.737 kb on - strand, within Psest_4055at 4228.737 kb on - strand, within Psest_4055at 4228.931 kb on + strand, within Psest_4055at 4229.100 kb on - strandat 4229.100 kb on - strandat 4229.147 kb on - strandat 4229.320 kb on + strand, within Psest_4056at 4229.321 kb on - strand, within Psest_4056at 4229.503 kb on + strand, within Psest_4056at 4229.503 kb on + strand, within Psest_4056at 4229.503 kb on + strand, within Psest_4056at 4229.503 kb on + strand, within Psest_4056at 4229.504 kb on - strand, within Psest_4056at 4229.504 kb on - strand, within Psest_4056at 4229.504 kb on - strand, within Psest_4056at 4230.065 kb on + strand, within Psest_4057at 4230.065 kb on + strand, within Psest_4057at 4230.065 kb on + strand, within Psest_4057at 4230.065 kb on + strand, within Psest_4057at 4230.065 kb on + strand, within Psest_4057at 4230.065 kb on + strand, within Psest_4057at 4230.065 kb on + strand, within Psest_4057at 4230.066 kb on - strand, within Psest_4057at 4230.223 kb on + strand, within Psest_4057at 4230.223 kb on + strand, within Psest_4057at 4230.223 kb on + strand, within Psest_4057at 4230.223 kb on + strand, within Psest_4057at 4230.223 kb on + strand, within Psest_4057at 4230.223 kb on + strand, within Psest_4057at 4230.224 kb on - strand, within Psest_4057at 4230.224 kb on - strand, within Psest_4057at 4230.533 kb on + strand, within Psest_4058at 4230.534 kb on - strand, within Psest_4058

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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4,228,400 + Psest_4055 0.34 +1.2
4,228,401 - Psest_4055 0.34 +0.2
4,228,401 - Psest_4055 0.34 -1.6
4,228,401 - Psest_4055 0.34 -0.0
4,228,401 - Psest_4055 0.34 +0.6
4,228,453 + Psest_4055 0.39 +0.5
4,228,454 - Psest_4055 0.39 -2.3
4,228,454 - Psest_4055 0.39 +0.7
4,228,550 + Psest_4055 0.49 +0.8
4,228,550 + Psest_4055 0.49 -0.6
4,228,550 + Psest_4055 0.49 +0.4
4,228,550 + Psest_4055 0.49 +0.4
4,228,551 - Psest_4055 0.49 +0.1
4,228,551 - Psest_4055 0.49 +0.5
4,228,571 + Psest_4055 0.51 +1.3
4,228,571 + Psest_4055 0.51 -0.3
4,228,571 + Psest_4055 0.51 -2.4
4,228,571 + Psest_4055 0.51 +0.1
4,228,572 - Psest_4055 0.51 -1.1
4,228,610 + Psest_4055 0.55 -0.4
4,228,610 + Psest_4055 0.55 -0.8
4,228,610 + Psest_4055 0.55 +0.4
4,228,736 + Psest_4055 0.68 +0.8
4,228,736 + Psest_4055 0.68 +1.3
4,228,736 + Psest_4055 0.68 -1.4
4,228,737 - Psest_4055 0.69 +0.9
4,228,737 - Psest_4055 0.69 -0.6
4,228,737 - Psest_4055 0.69 -0.6
4,228,737 - Psest_4055 0.69 +0.3
4,228,737 - Psest_4055 0.69 -0.2
4,228,931 + Psest_4055 0.89 -0.8
4,229,100 - +0.3
4,229,100 - +0.6
4,229,147 - -0.0
4,229,320 + Psest_4056 0.33 +2.3
4,229,321 - Psest_4056 0.33 +0.0
4,229,503 + Psest_4056 0.63 +1.0
4,229,503 + Psest_4056 0.63 +1.7
4,229,503 + Psest_4056 0.63 -0.6
4,229,503 + Psest_4056 0.63 +1.2
4,229,504 - Psest_4056 0.63 +0.5
4,229,504 - Psest_4056 0.63 +0.7
4,229,504 - Psest_4056 0.63 +0.5
4,230,065 + Psest_4057 0.49 -0.0
4,230,065 + Psest_4057 0.49 +1.5
4,230,065 + Psest_4057 0.49 -0.9
4,230,065 + Psest_4057 0.49 -0.3
4,230,065 + Psest_4057 0.49 -0.9
4,230,065 + Psest_4057 0.49 +0.7
4,230,065 + Psest_4057 0.49 +0.6
4,230,066 - Psest_4057 0.50 -0.2
4,230,223 + Psest_4057 0.74 -1.2
4,230,223 + Psest_4057 0.74 -0.5
4,230,223 + Psest_4057 0.74 +0.5
4,230,223 + Psest_4057 0.74 -1.2
4,230,223 + Psest_4057 0.74 +0.1
4,230,223 + Psest_4057 0.74 +0.1
4,230,224 - Psest_4057 0.74 -0.6
4,230,224 - Psest_4057 0.74 -0.1
4,230,533 + Psest_4058 0.17 +0.3
4,230,534 - Psest_4058 0.17 +0.6

Or see this region's nucleotide sequence