Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3270

Experiment: L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3268 and Psest_3270 are separated by 728 nucleotidesPsest_3270 and Psest_3271 are separated by 117 nucleotides Psest_3268: Psest_3268 - mraZ protein, at 3,438,086 to 3,438,541 _3268 Psest_3270: Psest_3270 - probable S-adenosylmethionine-dependent methyltransferase, YraL family, at 3,439,270 to 3,440,133 _3270 Psest_3271: Psest_3271 - Putative lipoprotein, at 3,440,251 to 3,442,053 _3271 Position (kb) 3439 3440 3441Strain fitness (log2 ratio) -2 -1 0 1 2at 3438.404 kb on - strand, within Psest_3268at 3438.404 kb on - strand, within Psest_3268at 3438.562 kb on - strandat 3438.578 kb on - strandat 3438.621 kb on - strandat 3438.686 kb on - strandat 3438.695 kb on - strandat 3439.271 kb on + strandat 3439.272 kb on - strandat 3439.819 kb on + strand, within Psest_3270at 3439.820 kb on - strand, within Psest_3270at 3439.820 kb on - strand, within Psest_3270at 3439.820 kb on - strand, within Psest_3270at 3440.091 kb on - strandat 3440.091 kb on - strandat 3440.091 kb on - strandat 3440.141 kb on + strandat 3440.141 kb on + strandat 3440.142 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
remove
3,438,404 - Psest_3268 0.70 -1.3
3,438,404 - Psest_3268 0.70 +0.3
3,438,562 - -0.6
3,438,578 - -2.0
3,438,621 - -1.5
3,438,686 - -0.3
3,438,695 - -1.5
3,439,271 + +0.0
3,439,272 - +0.2
3,439,819 + Psest_3270 0.64 -2.4
3,439,820 - Psest_3270 0.64 +1.0
3,439,820 - Psest_3270 0.64 +1.8
3,439,820 - Psest_3270 0.64 +0.6
3,440,091 - +1.5
3,440,091 - +0.5
3,440,091 - -0.2
3,440,141 + +1.0
3,440,141 + -0.9
3,440,142 - -0.5

Or see this region's nucleotide sequence