Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2383

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2382 and Psest_2383 are separated by 34 nucleotidesPsest_2383 and Psest_2384 are separated by 93 nucleotidesPsest_2384 and Psest_2385 overlap by 4 nucleotides Psest_2382: Psest_2382 - coenzyme PQQ biosynthesis probable peptidase PqqF, at 2,534,543 to 2,537,083 _2382 Psest_2383: Psest_2383 - Predicted transcriptional regulators, at 2,537,118 to 2,538,065 _2383 Psest_2384: Psest_2384 - Uncharacterized protein conserved in bacteria, at 2,538,159 to 2,538,608 _2384 Psest_2385: Psest_2385 - hypothetical protein, at 2,538,605 to 2,538,919 _2385 Position (kb) 2537 2538 2539Strain fitness (log2 ratio) -2 -1 0 1 2at 2536.223 kb on - strand, within Psest_2382at 2536.484 kb on + strand, within Psest_2382at 2536.506 kb on + strand, within Psest_2382at 2536.506 kb on + strand, within Psest_2382at 2536.506 kb on + strand, within Psest_2382at 2536.507 kb on - strand, within Psest_2382at 2536.507 kb on - strand, within Psest_2382at 2536.683 kb on - strand, within Psest_2382at 2536.683 kb on - strand, within Psest_2382at 2536.683 kb on - strand, within Psest_2382at 2536.738 kb on + strand, within Psest_2382at 2537.656 kb on + strand, within Psest_2383at 2537.656 kb on + strand, within Psest_2383at 2537.657 kb on - strand, within Psest_2383at 2537.657 kb on - strand, within Psest_2383at 2537.657 kb on - strand, within Psest_2383at 2537.657 kb on - strand, within Psest_2383at 2537.677 kb on + strand, within Psest_2383at 2537.677 kb on + strand, within Psest_2383at 2537.678 kb on - strand, within Psest_2383at 2537.678 kb on - strand, within Psest_2383at 2537.678 kb on - strand, within Psest_2383at 2537.678 kb on - strand, within Psest_2383at 2537.891 kb on - strand, within Psest_2383at 2537.912 kb on + strand, within Psest_2383at 2537.912 kb on + strand, within Psest_2383at 2538.006 kb on + strandat 2538.006 kb on + strandat 2538.006 kb on + strandat 2538.007 kb on - strandat 2538.007 kb on - strandat 2538.007 kb on - strandat 2538.007 kb on - strandat 2538.137 kb on + strandat 2538.137 kb on + strandat 2538.138 kb on - strandat 2538.186 kb on + strandat 2538.186 kb on + strandat 2538.186 kb on + strandat 2538.186 kb on + strandat 2538.186 kb on + strandat 2538.186 kb on + strandat 2538.187 kb on - strandat 2538.187 kb on - strandat 2538.187 kb on - strandat 2538.187 kb on - strandat 2538.325 kb on + strand, within Psest_2384at 2538.325 kb on + strand, within Psest_2384at 2538.325 kb on + strand, within Psest_2384at 2538.326 kb on - strand, within Psest_2384at 2538.326 kb on - strand, within Psest_2384at 2538.388 kb on - strand, within Psest_2384at 2538.606 kb on + strandat 2538.606 kb on + strandat 2538.606 kb on + strandat 2538.607 kb on - strandat 2538.702 kb on + strand, within Psest_2385at 2538.864 kb on - strand, within Psest_2385at 2538.932 kb on + strandat 2538.932 kb on + strandat 2538.934 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,536,223 - Psest_2382 0.66 +1.8
2,536,484 + Psest_2382 0.76 -1.0
2,536,506 + Psest_2382 0.77 -0.8
2,536,506 + Psest_2382 0.77 +1.1
2,536,506 + Psest_2382 0.77 +0.0
2,536,507 - Psest_2382 0.77 -0.3
2,536,507 - Psest_2382 0.77 -0.3
2,536,683 - Psest_2382 0.84 +0.3
2,536,683 - Psest_2382 0.84 -0.1
2,536,683 - Psest_2382 0.84 -1.1
2,536,738 + Psest_2382 0.86 -0.6
2,537,656 + Psest_2383 0.57 +0.6
2,537,656 + Psest_2383 0.57 +0.6
2,537,657 - Psest_2383 0.57 -0.3
2,537,657 - Psest_2383 0.57 +1.3
2,537,657 - Psest_2383 0.57 +0.9
2,537,657 - Psest_2383 0.57 +1.3
2,537,677 + Psest_2383 0.59 -0.7
2,537,677 + Psest_2383 0.59 -0.7
2,537,678 - Psest_2383 0.59 +1.1
2,537,678 - Psest_2383 0.59 +1.1
2,537,678 - Psest_2383 0.59 +1.1
2,537,678 - Psest_2383 0.59 +1.2
2,537,891 - Psest_2383 0.82 +1.7
2,537,912 + Psest_2383 0.84 +0.6
2,537,912 + Psest_2383 0.84 +0.1
2,538,006 + +0.7
2,538,006 + -0.9
2,538,006 + +0.5
2,538,007 - +1.0
2,538,007 - +0.7
2,538,007 - +0.2
2,538,007 - +0.5
2,538,137 + -0.5
2,538,137 + +1.1
2,538,138 - -0.7
2,538,186 + +0.4
2,538,186 + +0.4
2,538,186 + -0.5
2,538,186 + +0.8
2,538,186 + +0.2
2,538,186 + -0.2
2,538,187 - -0.5
2,538,187 - +1.8
2,538,187 - -1.9
2,538,187 - -0.1
2,538,325 + Psest_2384 0.37 -1.1
2,538,325 + Psest_2384 0.37 +0.0
2,538,325 + Psest_2384 0.37 -1.7
2,538,326 - Psest_2384 0.37 +0.3
2,538,326 - Psest_2384 0.37 +0.4
2,538,388 - Psest_2384 0.51 -0.2
2,538,606 + +0.2
2,538,606 + -0.4
2,538,606 + +0.0
2,538,607 - -1.2
2,538,702 + Psest_2385 0.31 +0.6
2,538,864 - Psest_2385 0.82 +0.8
2,538,932 + -1.8
2,538,932 + -0.1
2,538,934 + -2.2

Or see this region's nucleotide sequence