Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2382 and Psest_2383 are separated by 34 nucleotides Psest_2383 and Psest_2384 are separated by 93 nucleotides Psest_2384 and Psest_2385 overlap by 4 nucleotides
Psest_2382: Psest_2382 - coenzyme PQQ biosynthesis probable peptidase PqqF, at 2,534,543 to 2,537,083
_2382
Psest_2383: Psest_2383 - Predicted transcriptional regulators, at 2,537,118 to 2,538,065
_2383
Psest_2384: Psest_2384 - Uncharacterized protein conserved in bacteria, at 2,538,159 to 2,538,608
_2384
Psest_2385: Psest_2385 - hypothetical protein, at 2,538,605 to 2,538,919
_2385
Position (kb)
2537
2538
2539 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2536.223 kb on - strand, within Psest_2382 at 2536.484 kb on + strand, within Psest_2382 at 2536.506 kb on + strand, within Psest_2382 at 2536.506 kb on + strand, within Psest_2382 at 2536.506 kb on + strand, within Psest_2382 at 2536.507 kb on - strand, within Psest_2382 at 2536.507 kb on - strand, within Psest_2382 at 2536.683 kb on - strand, within Psest_2382 at 2536.683 kb on - strand, within Psest_2382 at 2536.683 kb on - strand, within Psest_2382 at 2536.738 kb on + strand, within Psest_2382 at 2537.656 kb on + strand, within Psest_2383 at 2537.656 kb on + strand, within Psest_2383 at 2537.657 kb on - strand, within Psest_2383 at 2537.657 kb on - strand, within Psest_2383 at 2537.657 kb on - strand, within Psest_2383 at 2537.657 kb on - strand, within Psest_2383 at 2537.677 kb on + strand, within Psest_2383 at 2537.677 kb on + strand, within Psest_2383 at 2537.678 kb on - strand, within Psest_2383 at 2537.678 kb on - strand, within Psest_2383 at 2537.678 kb on - strand, within Psest_2383 at 2537.678 kb on - strand, within Psest_2383 at 2537.891 kb on - strand, within Psest_2383 at 2537.912 kb on + strand, within Psest_2383 at 2537.912 kb on + strand, within Psest_2383 at 2538.006 kb on + strand at 2538.006 kb on + strand at 2538.006 kb on + strand at 2538.007 kb on - strand at 2538.007 kb on - strand at 2538.007 kb on - strand at 2538.007 kb on - strand at 2538.137 kb on + strand at 2538.137 kb on + strand at 2538.138 kb on - strand at 2538.186 kb on + strand at 2538.186 kb on + strand at 2538.186 kb on + strand at 2538.186 kb on + strand at 2538.186 kb on + strand at 2538.186 kb on + strand at 2538.187 kb on - strand at 2538.187 kb on - strand at 2538.187 kb on - strand at 2538.187 kb on - strand at 2538.325 kb on + strand, within Psest_2384 at 2538.325 kb on + strand, within Psest_2384 at 2538.325 kb on + strand, within Psest_2384 at 2538.326 kb on - strand, within Psest_2384 at 2538.326 kb on - strand, within Psest_2384 at 2538.388 kb on - strand, within Psest_2384 at 2538.606 kb on + strand at 2538.606 kb on + strand at 2538.606 kb on + strand at 2538.607 kb on - strand at 2538.702 kb on + strand, within Psest_2385 at 2538.864 kb on - strand, within Psest_2385 at 2538.932 kb on + strand at 2538.932 kb on + strand at 2538.934 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,536,223 - Psest_2382 0.66 +1.8 2,536,484 + Psest_2382 0.76 -1.0 2,536,506 + Psest_2382 0.77 -0.8 2,536,506 + Psest_2382 0.77 +1.1 2,536,506 + Psest_2382 0.77 +0.0 2,536,507 - Psest_2382 0.77 -0.3 2,536,507 - Psest_2382 0.77 -0.3 2,536,683 - Psest_2382 0.84 +0.3 2,536,683 - Psest_2382 0.84 -0.1 2,536,683 - Psest_2382 0.84 -1.1 2,536,738 + Psest_2382 0.86 -0.6 2,537,656 + Psest_2383 0.57 +0.6 2,537,656 + Psest_2383 0.57 +0.6 2,537,657 - Psest_2383 0.57 -0.3 2,537,657 - Psest_2383 0.57 +1.3 2,537,657 - Psest_2383 0.57 +0.9 2,537,657 - Psest_2383 0.57 +1.3 2,537,677 + Psest_2383 0.59 -0.7 2,537,677 + Psest_2383 0.59 -0.7 2,537,678 - Psest_2383 0.59 +1.1 2,537,678 - Psest_2383 0.59 +1.1 2,537,678 - Psest_2383 0.59 +1.1 2,537,678 - Psest_2383 0.59 +1.2 2,537,891 - Psest_2383 0.82 +1.7 2,537,912 + Psest_2383 0.84 +0.6 2,537,912 + Psest_2383 0.84 +0.1 2,538,006 + +0.7 2,538,006 + -0.9 2,538,006 + +0.5 2,538,007 - +1.0 2,538,007 - +0.7 2,538,007 - +0.2 2,538,007 - +0.5 2,538,137 + -0.5 2,538,137 + +1.1 2,538,138 - -0.7 2,538,186 + +0.4 2,538,186 + +0.4 2,538,186 + -0.5 2,538,186 + +0.8 2,538,186 + +0.2 2,538,186 + -0.2 2,538,187 - -0.5 2,538,187 - +1.8 2,538,187 - -1.9 2,538,187 - -0.1 2,538,325 + Psest_2384 0.37 -1.1 2,538,325 + Psest_2384 0.37 +0.0 2,538,325 + Psest_2384 0.37 -1.7 2,538,326 - Psest_2384 0.37 +0.3 2,538,326 - Psest_2384 0.37 +0.4 2,538,388 - Psest_2384 0.51 -0.2 2,538,606 + +0.2 2,538,606 + -0.4 2,538,606 + +0.0 2,538,607 - -1.2 2,538,702 + Psest_2385 0.31 +0.6 2,538,864 - Psest_2385 0.82 +0.8 2,538,932 + -1.8 2,538,932 + -0.1 2,538,934 + -2.2
Or see this region's nucleotide sequence