Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2067

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2066 and Psest_2067 are separated by 2 nucleotidesPsest_2067 and Psest_2068 overlap by 4 nucleotides Psest_2066: Psest_2066 - ABC-type uncharacterized transport system, permease component, at 2,192,268 to 2,193,341 _2066 Psest_2067: Psest_2067 - ABC-type oligopeptide transport system, periplasmic component, at 2,193,344 to 2,195,230 _2067 Psest_2068: Psest_2068 - ABC-type oligopeptide transport system, periplasmic component, at 2,195,227 to 2,197,056 _2068 Position (kb) 2193 2194 2195 2196Strain fitness (log2 ratio) -1 0 1 2at 2192.926 kb on + strand, within Psest_2066at 2193.536 kb on - strand, within Psest_2067at 2194.305 kb on + strand, within Psest_2067at 2194.753 kb on - strand, within Psest_2067at 2194.880 kb on - strand, within Psest_2067at 2195.277 kb on + strandat 2195.278 kb on - strandat 2195.280 kb on - strandat 2195.520 kb on - strand, within Psest_2068at 2195.520 kb on - strand, within Psest_2068at 2195.586 kb on - strand, within Psest_2068at 2195.606 kb on + strand, within Psest_2068at 2195.606 kb on + strand, within Psest_2068at 2195.957 kb on + strand, within Psest_2068at 2195.958 kb on - strand, within Psest_2068at 2195.958 kb on - strand, within Psest_2068at 2195.958 kb on - strand, within Psest_2068at 2195.958 kb on - strand, within Psest_2068at 2195.958 kb on - strand, within Psest_2068at 2195.984 kb on + strand, within Psest_2068at 2195.985 kb on - strand, within Psest_2068at 2195.985 kb on - strand, within Psest_2068at 2195.985 kb on - strand, within Psest_2068at 2195.985 kb on - strand, within Psest_2068at 2195.985 kb on - strand, within Psest_2068at 2196.198 kb on - strand, within Psest_2068at 2196.198 kb on - strand, within Psest_2068at 2196.198 kb on - strand, within Psest_2068at 2196.198 kb on - strand, within Psest_2068at 2196.198 kb on - strand, within Psest_2068

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,192,926 + Psest_2066 0.61 +1.4
2,193,536 - Psest_2067 0.10 +1.0
2,194,305 + Psest_2067 0.51 -0.2
2,194,753 - Psest_2067 0.75 +2.3
2,194,880 - Psest_2067 0.81 -1.3
2,195,277 + +1.0
2,195,278 - +0.5
2,195,280 - -0.0
2,195,520 - Psest_2068 0.16 +0.7
2,195,520 - Psest_2068 0.16 -1.5
2,195,586 - Psest_2068 0.20 +0.6
2,195,606 + Psest_2068 0.21 +0.5
2,195,606 + Psest_2068 0.21 -0.0
2,195,957 + Psest_2068 0.40 +0.9
2,195,958 - Psest_2068 0.40 -0.1
2,195,958 - Psest_2068 0.40 +0.5
2,195,958 - Psest_2068 0.40 +0.4
2,195,958 - Psest_2068 0.40 +0.9
2,195,958 - Psest_2068 0.40 +2.0
2,195,984 + Psest_2068 0.41 +0.9
2,195,985 - Psest_2068 0.41 +1.1
2,195,985 - Psest_2068 0.41 +1.1
2,195,985 - Psest_2068 0.41 -0.3
2,195,985 - Psest_2068 0.41 +0.2
2,195,985 - Psest_2068 0.41 +0.5
2,196,198 - Psest_2068 0.53 -0.4
2,196,198 - Psest_2068 0.53 -0.8
2,196,198 - Psest_2068 0.53 -0.3
2,196,198 - Psest_2068 0.53 +0.8
2,196,198 - Psest_2068 0.53 +0.6

Or see this region's nucleotide sequence