Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1657

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1656 and Psest_1657 overlap by 8 nucleotidesPsest_1657 and Psest_1658 are separated by 2 nucleotidesPsest_1658 and Psest_1659 overlap by 1 nucleotides Psest_1656: Psest_1656 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit, at 1,766,213 to 1,767,424 _1656 Psest_1657: Psest_1657 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit, at 1,767,417 to 1,768,211 _1657 Psest_1658: Psest_1658 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit, at 1,768,214 to 1,768,882 _1658 Psest_1659: Psest_1659 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit, at 1,768,882 to 1,769,490 _1659 Position (kb) 1767 1768 1769Strain fitness (log2 ratio) -1 0 1 2 3at 1766.576 kb on + strand, within Psest_1656at 1766.576 kb on + strand, within Psest_1656at 1766.591 kb on + strand, within Psest_1656at 1766.591 kb on + strand, within Psest_1656at 1767.172 kb on + strand, within Psest_1656at 1767.172 kb on + strand, within Psest_1656at 1767.415 kb on + strandat 1767.415 kb on + strandat 1767.415 kb on + strandat 1767.422 kb on + strandat 1767.798 kb on + strand, within Psest_1657at 1767.798 kb on + strand, within Psest_1657at 1767.798 kb on + strand, within Psest_1657at 1767.800 kb on + strand, within Psest_1657at 1767.800 kb on + strand, within Psest_1657at 1767.800 kb on + strand, within Psest_1657at 1768.187 kb on + strandat 1768.487 kb on + strand, within Psest_1658at 1768.716 kb on + strand, within Psest_1658at 1768.891 kb on + strandat 1769.059 kb on + strand, within Psest_1659at 1769.060 kb on - strand, within Psest_1659at 1769.065 kb on + strand, within Psest_1659at 1769.140 kb on + strand, within Psest_1659at 1769.140 kb on + strand, within Psest_1659at 1769.194 kb on + strand, within Psest_1659at 1769.209 kb on + strand, within Psest_1659

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,766,576 + Psest_1656 0.30 +3.0
1,766,576 + Psest_1656 0.30 +1.5
1,766,591 + Psest_1656 0.31 +1.9
1,766,591 + Psest_1656 0.31 +1.1
1,767,172 + Psest_1656 0.79 +1.1
1,767,172 + Psest_1656 0.79 +0.8
1,767,415 + +0.2
1,767,415 + +1.9
1,767,415 + +1.2
1,767,422 + +1.9
1,767,798 + Psest_1657 0.48 +3.1
1,767,798 + Psest_1657 0.48 +0.7
1,767,798 + Psest_1657 0.48 +2.8
1,767,800 + Psest_1657 0.48 -0.5
1,767,800 + Psest_1657 0.48 +0.1
1,767,800 + Psest_1657 0.48 +0.5
1,768,187 + +1.7
1,768,487 + Psest_1658 0.41 +2.4
1,768,716 + Psest_1658 0.75 +0.9
1,768,891 + +3.1
1,769,059 + Psest_1659 0.29 -0.1
1,769,060 - Psest_1659 0.29 +2.9
1,769,065 + Psest_1659 0.30 -0.5
1,769,140 + Psest_1659 0.42 -0.1
1,769,140 + Psest_1659 0.42 -0.4
1,769,194 + Psest_1659 0.51 +2.0
1,769,209 + Psest_1659 0.54 +0.3

Or see this region's nucleotide sequence