Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1655

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1654 and Psest_1655 are separated by 334 nucleotidesPsest_1655 and Psest_1656 are separated by 3 nucleotides Psest_1654: Psest_1654 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 1,763,086 to 1,764,537 _1654 Psest_1655: Psest_1655 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit, at 1,764,872 to 1,766,209 _1655 Psest_1656: Psest_1656 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit, at 1,766,213 to 1,767,424 _1656 Position (kb) 1764 1765 1766 1767Strain fitness (log2 ratio) -1 0 1 2 3 4at 1764.729 kb on + strandat 1764.729 kb on + strandat 1764.784 kb on + strandat 1764.807 kb on + strandat 1764.880 kb on + strandat 1765.877 kb on + strand, within Psest_1655at 1765.877 kb on + strand, within Psest_1655at 1765.877 kb on + strand, within Psest_1655at 1765.877 kb on + strand, within Psest_1655at 1765.877 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.919 kb on + strand, within Psest_1655at 1765.920 kb on - strand, within Psest_1655at 1765.920 kb on - strand, within Psest_1655at 1765.920 kb on - strand, within Psest_1655at 1765.920 kb on - strand, within Psest_1655at 1765.921 kb on + strand, within Psest_1655at 1766.135 kb on + strandat 1766.135 kb on + strandat 1766.135 kb on + strandat 1766.135 kb on + strandat 1766.270 kb on + strandat 1766.401 kb on + strand, within Psest_1656at 1766.576 kb on + strand, within Psest_1656at 1766.576 kb on + strand, within Psest_1656at 1766.591 kb on + strand, within Psest_1656at 1766.591 kb on + strand, within Psest_1656at 1767.172 kb on + strand, within Psest_1656at 1767.172 kb on + strand, within Psest_1656

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,764,729 + -0.4
1,764,729 + -1.7
1,764,784 + +0.2
1,764,807 + +0.2
1,764,880 + +0.5
1,765,877 + Psest_1655 0.75 +1.1
1,765,877 + Psest_1655 0.75 +0.8
1,765,877 + Psest_1655 0.75 +1.1
1,765,877 + Psest_1655 0.75 +0.2
1,765,877 + Psest_1655 0.75 +0.1
1,765,919 + Psest_1655 0.78 +0.7
1,765,919 + Psest_1655 0.78 +1.2
1,765,919 + Psest_1655 0.78 +1.7
1,765,919 + Psest_1655 0.78 +0.5
1,765,919 + Psest_1655 0.78 +3.3
1,765,919 + Psest_1655 0.78 +1.3
1,765,919 + Psest_1655 0.78 +1.9
1,765,919 + Psest_1655 0.78 -0.1
1,765,919 + Psest_1655 0.78 +0.6
1,765,919 + Psest_1655 0.78 +1.5
1,765,919 + Psest_1655 0.78 -1.3
1,765,919 + Psest_1655 0.78 +0.9
1,765,920 - Psest_1655 0.78 +2.1
1,765,920 - Psest_1655 0.78 -1.1
1,765,920 - Psest_1655 0.78 -0.5
1,765,920 - Psest_1655 0.78 +4.1
1,765,921 + Psest_1655 0.78 -0.4
1,766,135 + +1.8
1,766,135 + +1.5
1,766,135 + +1.8
1,766,135 + +1.5
1,766,270 + +2.3
1,766,401 + Psest_1656 0.16 -0.9
1,766,576 + Psest_1656 0.30 +3.0
1,766,576 + Psest_1656 0.30 +1.5
1,766,591 + Psest_1656 0.31 +1.9
1,766,591 + Psest_1656 0.31 +1.1
1,767,172 + Psest_1656 0.79 +1.1
1,767,172 + Psest_1656 0.79 +0.8

Or see this region's nucleotide sequence