Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4251 and Psest_4252 are separated by 0 nucleotides Psest_4252 and Psest_4253 are separated by 164 nucleotides
Psest_4251: Psest_4251 - hypothetical protein, at 4,436,332 to 4,439,172
_4251
Psest_4252: Psest_4252 - Uncharacterized protein conserved in bacteria, at 4,439,173 to 4,439,583
_4252
Psest_4253: Psest_4253 - hypothetical protein, at 4,439,748 to 4,441,619
_4253
Position (kb) 4439
4440 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4438.195 kb on + strand, within Psest_4251 at 4438.195 kb on + strand, within Psest_4251 at 4438.195 kb on + strand, within Psest_4251 at 4438.196 kb on - strand, within Psest_4251 at 4438.246 kb on + strand, within Psest_4251 at 4438.247 kb on - strand, within Psest_4251 at 4438.501 kb on + strand, within Psest_4251 at 4438.501 kb on + strand, within Psest_4251 at 4438.502 kb on - strand, within Psest_4251 at 4438.587 kb on + strand, within Psest_4251 at 4438.607 kb on + strand, within Psest_4251 at 4438.629 kb on + strand, within Psest_4251 at 4438.629 kb on + strand, within Psest_4251 at 4438.630 kb on - strand, within Psest_4251 at 4438.630 kb on - strand, within Psest_4251 at 4438.686 kb on - strand, within Psest_4251 at 4438.868 kb on + strand, within Psest_4251 at 4438.886 kb on + strand, within Psest_4251 at 4438.915 kb on + strand at 4438.915 kb on + strand at 4438.915 kb on + strand at 4438.915 kb on + strand at 4438.915 kb on + strand at 4438.915 kb on + strand at 4438.915 kb on + strand at 4438.916 kb on - strand at 4438.916 kb on - strand at 4438.916 kb on - strand at 4438.920 kb on - strand at 4438.920 kb on - strand at 4438.920 kb on - strand at 4438.939 kb on + strand at 4438.939 kb on + strand at 4438.940 kb on - strand at 4438.988 kb on + strand at 4438.988 kb on + strand at 4438.989 kb on - strand at 4438.989 kb on - strand at 4438.989 kb on - strand at 4439.026 kb on + strand at 4439.027 kb on - strand at 4439.038 kb on - strand at 4439.093 kb on + strand at 4439.099 kb on - strand at 4439.099 kb on - strand at 4439.102 kb on + strand at 4439.103 kb on - strand at 4439.109 kb on + strand at 4439.110 kb on - strand at 4439.128 kb on + strand at 4439.170 kb on + strand at 4439.170 kb on + strand at 4439.182 kb on - strand at 4439.192 kb on + strand at 4439.244 kb on + strand, within Psest_4252 at 4439.301 kb on + strand, within Psest_4252 at 4439.339 kb on - strand, within Psest_4252 at 4439.390 kb on + strand, within Psest_4252 at 4439.401 kb on + strand, within Psest_4252 at 4439.402 kb on - strand, within Psest_4252 at 4439.402 kb on - strand, within Psest_4252 at 4439.480 kb on + strand, within Psest_4252 at 4439.554 kb on + strand at 4439.579 kb on + strand at 4439.579 kb on + strand at 4439.579 kb on + strand at 4439.579 kb on + strand at 4439.579 kb on + strand at 4439.579 kb on + strand at 4439.579 kb on + strand at 4439.580 kb on - strand at 4439.589 kb on - strand at 4439.606 kb on + strand at 4439.606 kb on + strand at 4439.606 kb on + strand at 4439.606 kb on + strand at 4439.607 kb on - strand at 4439.626 kb on - strand at 4439.630 kb on + strand at 4439.630 kb on + strand at 4439.653 kb on + strand at 4439.734 kb on - strand at 4439.734 kb on - strand at 4439.744 kb on - strand at 4439.744 kb on - strand at 4439.818 kb on - strand at 4439.818 kb on - strand at 4439.818 kb on - strand at 4439.818 kb on - strand at 4439.847 kb on + strand at 4439.871 kb on + strand at 4439.871 kb on + strand at 4439.872 kb on - strand at 4439.872 kb on - strand at 4439.907 kb on + strand at 4439.907 kb on + strand at 4439.908 kb on - strand at 4439.910 kb on + strand at 4439.910 kb on + strand at 4439.910 kb on + strand at 4439.910 kb on + strand at 4439.910 kb on + strand at 4439.911 kb on - strand at 4439.911 kb on - strand at 4439.911 kb on - strand at 4439.911 kb on - strand at 4439.911 kb on - strand at 4439.911 kb on - strand at 4439.911 kb on - strand at 4439.911 kb on - strand at 4439.913 kb on + strand at 4439.913 kb on + strand at 4439.913 kb on + strand at 4439.913 kb on + strand at 4439.913 kb on + strand at 4439.913 kb on + strand at 4439.913 kb on + strand at 4439.913 kb on + strand at 4439.914 kb on - strand at 4439.914 kb on - strand at 4439.914 kb on - strand at 4439.914 kb on - strand at 4439.949 kb on + strand, within Psest_4253 at 4440.010 kb on - strand, within Psest_4253 at 4440.123 kb on + strand, within Psest_4253 at 4440.288 kb on + strand, within Psest_4253 at 4440.288 kb on + strand, within Psest_4253 at 4440.288 kb on + strand, within Psest_4253 at 4440.288 kb on + strand, within Psest_4253 at 4440.288 kb on + strand, within Psest_4253 at 4440.288 kb on + strand, within Psest_4253 at 4440.288 kb on + strand, within Psest_4253 at 4440.288 kb on + strand, within Psest_4253 at 4440.288 kb on + strand, within Psest_4253 at 4440.289 kb on - strand, within Psest_4253 at 4440.289 kb on - strand, within Psest_4253 at 4440.289 kb on - strand, within Psest_4253 at 4440.289 kb on - strand, within Psest_4253 at 4440.291 kb on + strand, within Psest_4253 at 4440.291 kb on + strand, within Psest_4253 at 4440.291 kb on + strand, within Psest_4253 at 4440.291 kb on + strand, within Psest_4253 at 4440.292 kb on - strand, within Psest_4253 at 4440.292 kb on - strand, within Psest_4253 at 4440.292 kb on - strand, within Psest_4253 at 4440.343 kb on - strand, within Psest_4253 at 4440.411 kb on + strand, within Psest_4253 at 4440.411 kb on + strand, within Psest_4253 at 4440.412 kb on - strand, within Psest_4253 at 4440.412 kb on - strand, within Psest_4253 at 4440.412 kb on - strand, within Psest_4253 at 4440.412 kb on - strand, within Psest_4253 at 4440.522 kb on + strand, within Psest_4253 at 4440.550 kb on - strand, within Psest_4253
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 4,438,195 + Psest_4251 0.66 +0.1 4,438,195 + Psest_4251 0.66 +0.4 4,438,195 + Psest_4251 0.66 -1.6 4,438,196 - Psest_4251 0.66 +0.8 4,438,246 + Psest_4251 0.67 +0.4 4,438,247 - Psest_4251 0.67 -0.4 4,438,501 + Psest_4251 0.76 -0.1 4,438,501 + Psest_4251 0.76 -0.6 4,438,502 - Psest_4251 0.76 -0.3 4,438,587 + Psest_4251 0.79 +0.2 4,438,607 + Psest_4251 0.80 +2.0 4,438,629 + Psest_4251 0.81 -0.8 4,438,629 + Psest_4251 0.81 +0.0 4,438,630 - Psest_4251 0.81 +0.3 4,438,630 - Psest_4251 0.81 +0.4 4,438,686 - Psest_4251 0.83 +0.7 4,438,868 + Psest_4251 0.89 +0.8 4,438,886 + Psest_4251 0.90 -0.6 4,438,915 + -0.4 4,438,915 + -1.2 4,438,915 + +0.5 4,438,915 + +0.2 4,438,915 + +0.7 4,438,915 + +0.3 4,438,915 + -0.5 4,438,916 - -0.5 4,438,916 - +0.6 4,438,916 - -0.5 4,438,920 - +0.3 4,438,920 - +0.7 4,438,920 - -0.1 4,438,939 + -1.0 4,438,939 + -0.6 4,438,940 - +0.2 4,438,988 + +1.6 4,438,988 + +0.4 4,438,989 - -0.5 4,438,989 - -1.2 4,438,989 - -1.3 4,439,026 + -0.3 4,439,027 - -0.5 4,439,038 - +0.5 4,439,093 + -0.1 4,439,099 - +1.3 4,439,099 - -2.5 4,439,102 + -2.5 4,439,103 - -2.0 4,439,109 + +0.3 4,439,110 - -1.4 4,439,128 + -0.6 4,439,170 + +1.2 4,439,170 + -0.7 4,439,182 - +0.4 4,439,192 + +0.1 4,439,244 + Psest_4252 0.17 +1.6 4,439,301 + Psest_4252 0.31 +0.4 4,439,339 - Psest_4252 0.40 -0.1 4,439,390 + Psest_4252 0.53 -0.7 4,439,401 + Psest_4252 0.55 -0.0 4,439,402 - Psest_4252 0.56 +0.8 4,439,402 - Psest_4252 0.56 +1.8 4,439,480 + Psest_4252 0.75 -2.5 4,439,554 + +0.3 4,439,579 + +1.0 4,439,579 + -1.0 4,439,579 + +0.3 4,439,579 + -0.0 4,439,579 + +0.6 4,439,579 + +0.1 4,439,579 + +0.3 4,439,580 - -0.2 4,439,589 - +0.8 4,439,606 + -1.0 4,439,606 + +0.2 4,439,606 + -0.9 4,439,606 + +0.4 4,439,607 - +0.2 4,439,626 - -0.0 4,439,630 + +2.4 4,439,630 + -0.1 4,439,653 + +0.6 4,439,734 - -1.1 4,439,734 - -0.5 4,439,744 - +1.5 4,439,744 - +1.8 4,439,818 - +0.1 4,439,818 - +0.1 4,439,818 - -0.7 4,439,818 - -0.1 4,439,847 + -0.4 4,439,871 + -0.3 4,439,871 + +0.4 4,439,872 - +0.5 4,439,872 - +0.3 4,439,907 + +0.2 4,439,907 + +1.1 4,439,908 - +0.6 4,439,910 + +0.9 4,439,910 + -1.0 4,439,910 + +0.6 4,439,910 + -0.0 4,439,910 + -0.3 4,439,911 - +0.3 4,439,911 - -2.5 4,439,911 - -0.3 4,439,911 - +1.9 4,439,911 - +1.8 4,439,911 - +0.3 4,439,911 - -0.3 4,439,911 - -0.0 4,439,913 + -1.7 4,439,913 + +1.0 4,439,913 + -0.1 4,439,913 + -1.2 4,439,913 + -0.2 4,439,913 + +1.2 4,439,913 + +1.2 4,439,913 + -1.5 4,439,914 - +2.2 4,439,914 - -0.0 4,439,914 - +0.7 4,439,914 - +0.5 4,439,949 + Psest_4253 0.11 -0.4 4,440,010 - Psest_4253 0.14 -0.4 4,440,123 + Psest_4253 0.20 -0.5 4,440,288 + Psest_4253 0.29 -0.0 4,440,288 + Psest_4253 0.29 +0.8 4,440,288 + Psest_4253 0.29 -0.5 4,440,288 + Psest_4253 0.29 +0.1 4,440,288 + Psest_4253 0.29 +0.8 4,440,288 + Psest_4253 0.29 +1.4 4,440,288 + Psest_4253 0.29 +0.9 4,440,288 + Psest_4253 0.29 -0.0 4,440,288 + Psest_4253 0.29 +0.1 4,440,289 - Psest_4253 0.29 +0.1 4,440,289 - Psest_4253 0.29 +0.5 4,440,289 - Psest_4253 0.29 -1.9 4,440,289 - Psest_4253 0.29 +0.1 4,440,291 + Psest_4253 0.29 -0.4 4,440,291 + Psest_4253 0.29 -0.7 4,440,291 + Psest_4253 0.29 +1.6 4,440,291 + Psest_4253 0.29 +0.0 4,440,292 - Psest_4253 0.29 +0.2 4,440,292 - Psest_4253 0.29 -0.3 4,440,292 - Psest_4253 0.29 +0.5 4,440,343 - Psest_4253 0.32 +0.6 4,440,411 + Psest_4253 0.35 +0.5 4,440,411 + Psest_4253 0.35 +1.1 4,440,412 - Psest_4253 0.35 -0.1 4,440,412 - Psest_4253 0.35 +0.8 4,440,412 - Psest_4253 0.35 -1.3 4,440,412 - Psest_4253 0.35 -1.5 4,440,522 + Psest_4253 0.41 +0.5 4,440,550 - Psest_4253 0.43 -0.4
Or see this region's nucleotide sequence