Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0061

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0059 and Psest_0060 are separated by 2 nucleotidesPsest_0060 and Psest_0061 are separated by 118 nucleotidesPsest_0061 and Psest_0062 are separated by 175 nucleotidesPsest_0062 and Psest_0063 overlap by 4 nucleotides Psest_0059: Psest_0059 - hypothetical protein, at 60,782 to 61,153 _0059 Psest_0060: Psest_0060 - Predicted Fe-S protein, at 61,156 to 61,338 _0060 Psest_0061: Psest_0061 - hypothetical protein, at 61,457 to 61,786 _0061 Psest_0062: Psest_0062 - tryptophan synthase, alpha subunit, at 61,962 to 62,771 _0062 Psest_0063: Psest_0063 - tryptophan synthase, beta subunit, at 62,768 to 63,979 _0063 Position (kb) 61 62Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 60.541 kb on + strandat 60.541 kb on + strandat 60.542 kb on - strandat 60.545 kb on + strandat 60.576 kb on + strandat 60.577 kb on - strandat 60.666 kb on + strandat 60.666 kb on + strandat 60.667 kb on - strandat 60.667 kb on - strandat 60.726 kb on - strandat 60.905 kb on + strand, within Psest_0059at 61.215 kb on + strand, within Psest_0060at 61.216 kb on - strand, within Psest_0060at 61.290 kb on - strand, within Psest_0060at 61.416 kb on + strandat 61.417 kb on - strandat 61.530 kb on + strand, within Psest_0061at 61.530 kb on + strand, within Psest_0061at 61.530 kb on + strand, within Psest_0061at 61.531 kb on - strand, within Psest_0061at 61.641 kb on + strand, within Psest_0061at 61.653 kb on + strand, within Psest_0061at 61.896 kb on + strandat 61.897 kb on - strandat 61.900 kb on + strandat 61.900 kb on + strandat 61.900 kb on + strandat 61.901 kb on - strandat 61.901 kb on - strandat 61.901 kb on - strandat 61.901 kb on - strandat 61.901 kb on - strandat 61.980 kb on + strandat 61.980 kb on + strandat 61.981 kb on - strandat 62.245 kb on + strand, within Psest_0062at 62.245 kb on + strand, within Psest_0062at 62.245 kb on + strand, within Psest_0062at 62.245 kb on + strand, within Psest_0062at 62.246 kb on - strand, within Psest_0062at 62.246 kb on - strand, within Psest_0062at 62.246 kb on - strand, within Psest_0062at 62.246 kb on - strand, within Psest_0062at 62.246 kb on - strand, within Psest_0062at 62.248 kb on + strand, within Psest_0062at 62.249 kb on - strand, within Psest_0062at 62.249 kb on - strand, within Psest_0062at 62.249 kb on - strand, within Psest_0062at 62.464 kb on + strand, within Psest_0062at 62.464 kb on + strand, within Psest_0062at 62.464 kb on + strand, within Psest_0062at 62.465 kb on - strand, within Psest_0062at 62.465 kb on - strand, within Psest_0062at 62.465 kb on - strand, within Psest_0062at 62.465 kb on - strand, within Psest_0062at 62.465 kb on - strand, within Psest_0062at 62.465 kb on - strand, within Psest_0062at 62.465 kb on - strand, within Psest_0062at 62.465 kb on - strand, within Psest_0062at 62.465 kb on - strand, within Psest_0062at 62.465 kb on - strand, within Psest_0062at 62.465 kb on - strand, within Psest_0062at 62.465 kb on - strand, within Psest_0062at 62.684 kb on - strand, within Psest_0062

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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60,541 + +1.2
60,541 + +1.2
60,542 - +0.4
60,545 + -0.3
60,576 + -0.6
60,577 - -1.9
60,666 + -1.1
60,666 + +0.8
60,667 - +0.8
60,667 - -0.6
60,726 - -0.6
60,905 + Psest_0059 0.33 -1.4
61,215 + Psest_0060 0.32 -0.1
61,216 - Psest_0060 0.33 -0.7
61,290 - Psest_0060 0.73 +0.8
61,416 + +0.6
61,417 - -0.8
61,530 + Psest_0061 0.22 +0.8
61,530 + Psest_0061 0.22 +0.7
61,530 + Psest_0061 0.22 -1.2
61,531 - Psest_0061 0.22 +1.1
61,641 + Psest_0061 0.56 +0.7
61,653 + Psest_0061 0.59 +0.6
61,896 + +0.2
61,897 - -0.1
61,900 + +0.4
61,900 + +0.6
61,900 + -1.8
61,901 - +0.9
61,901 - +0.2
61,901 - -1.0
61,901 - +1.3
61,901 - +0.6
61,980 + +0.4
61,980 + -2.7
61,981 - -0.9
62,245 + Psest_0062 0.35 -4.3
62,245 + Psest_0062 0.35 -3.7
62,245 + Psest_0062 0.35 -3.0
62,245 + Psest_0062 0.35 -4.5
62,246 - Psest_0062 0.35 -1.4
62,246 - Psest_0062 0.35 -1.3
62,246 - Psest_0062 0.35 -1.2
62,246 - Psest_0062 0.35 -2.2
62,246 - Psest_0062 0.35 -3.3
62,248 + Psest_0062 0.35 -3.8
62,249 - Psest_0062 0.35 -1.6
62,249 - Psest_0062 0.35 -0.8
62,249 - Psest_0062 0.35 -2.9
62,464 + Psest_0062 0.62 -6.3
62,464 + Psest_0062 0.62 -5.6
62,464 + Psest_0062 0.62 -5.8
62,465 - Psest_0062 0.62 -3.2
62,465 - Psest_0062 0.62 -3.1
62,465 - Psest_0062 0.62 -5.7
62,465 - Psest_0062 0.62 -4.5
62,465 - Psest_0062 0.62 -3.2
62,465 - Psest_0062 0.62 -2.6
62,465 - Psest_0062 0.62 -1.6
62,465 - Psest_0062 0.62 -3.8
62,465 - Psest_0062 0.62 -4.5
62,465 - Psest_0062 0.62 -2.7
62,465 - Psest_0062 0.62 -4.7
62,465 - Psest_0062 0.62 -2.4
62,684 - Psest_0062 0.89 -6.1

Or see this region's nucleotide sequence