Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4151

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4150 and Psest_4151 are separated by 50 nucleotidesPsest_4151 and Psest_4152 overlap by 1 nucleotidesPsest_4152 and Psest_4153 overlap by 1 nucleotidesPsest_4153 and Psest_4154 are separated by 98 nucleotides Psest_4150: Psest_4150 - fagellar hook-basal body proteins, at 4,333,168 to 4,334,358 _4150 Psest_4151: Psest_4151 - Flagellar hook capping protein, at 4,334,409 to 4,335,074 _4151 Psest_4152: Psest_4152 - flagellar basal-body rod protein FlgC, at 4,335,074 to 4,335,502 _4152 Psest_4153: Psest_4153 - flagellar basal-body rod protein FlgB, at 4,335,502 to 4,335,867 _4153 Psest_4154: Psest_4154 - flagella basal body P-ring formation protein FlgA, at 4,335,966 to 4,336,754 _4154 Position (kb) 4334 4335 4336Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4333.469 kb on + strand, within Psest_4150at 4333.469 kb on + strand, within Psest_4150at 4333.470 kb on - strand, within Psest_4150at 4333.478 kb on + strand, within Psest_4150at 4333.479 kb on - strand, within Psest_4150at 4333.589 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.730 kb on + strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.731 kb on - strand, within Psest_4150at 4333.733 kb on + strand, within Psest_4150at 4333.733 kb on + strand, within Psest_4150at 4333.733 kb on + strand, within Psest_4150at 4333.772 kb on + strand, within Psest_4150at 4333.772 kb on + strand, within Psest_4150at 4333.772 kb on + strand, within Psest_4150at 4333.772 kb on + strand, within Psest_4150at 4333.808 kb on + strand, within Psest_4150at 4333.808 kb on + strand, within Psest_4150at 4333.808 kb on + strand, within Psest_4150at 4333.808 kb on + strand, within Psest_4150at 4333.808 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.823 kb on + strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.824 kb on - strand, within Psest_4150at 4333.835 kb on + strand, within Psest_4150at 4333.835 kb on + strand, within Psest_4150at 4333.835 kb on + strand, within Psest_4150at 4333.835 kb on + strand, within Psest_4150at 4333.835 kb on + strand, within Psest_4150at 4333.835 kb on + strand, within Psest_4150at 4333.836 kb on - strand, within Psest_4150at 4333.836 kb on - strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.039 kb on + strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.040 kb on - strand, within Psest_4150at 4334.094 kb on + strand, within Psest_4150at 4334.443 kb on + strandat 4334.573 kb on - strand, within Psest_4151at 4334.938 kb on + strand, within Psest_4151at 4334.938 kb on + strand, within Psest_4151at 4334.938 kb on + strand, within Psest_4151at 4334.939 kb on - strand, within Psest_4151at 4334.939 kb on - strand, within Psest_4151at 4335.068 kb on + strandat 4335.207 kb on + strand, within Psest_4152at 4335.207 kb on + strand, within Psest_4152at 4335.207 kb on + strand, within Psest_4152at 4335.207 kb on + strand, within Psest_4152at 4335.207 kb on + strand, within Psest_4152at 4335.207 kb on + strand, within Psest_4152at 4335.208 kb on - strand, within Psest_4152at 4335.213 kb on + strand, within Psest_4152at 4335.213 kb on + strand, within Psest_4152at 4335.214 kb on - strand, within Psest_4152at 4335.288 kb on - strand, within Psest_4152at 4335.346 kb on - strand, within Psest_4152at 4335.483 kb on + strandat 4335.483 kb on + strandat 4335.483 kb on + strandat 4335.484 kb on - strandat 4335.484 kb on - strandat 4335.859 kb on + strandat 4335.860 kb on - strandat 4335.861 kb on + strandat 4335.861 kb on + strandat 4335.861 kb on + strandat 4335.862 kb on - strandat 4335.862 kb on - strandat 4335.946 kb on + strandat 4335.946 kb on + strandat 4335.947 kb on - strandat 4336.049 kb on + strand, within Psest_4154at 4336.049 kb on + strand, within Psest_4154at 4336.049 kb on + strand, within Psest_4154at 4336.049 kb on + strand, within Psest_4154at 4336.049 kb on + strand, within Psest_4154at 4336.050 kb on - strand, within Psest_4154

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,333,469 + Psest_4150 0.25 +0.8
4,333,469 + Psest_4150 0.25 -0.3
4,333,470 - Psest_4150 0.25 +0.2
4,333,478 + Psest_4150 0.26 +0.4
4,333,479 - Psest_4150 0.26 +0.1
4,333,589 + Psest_4150 0.35 +1.1
4,333,730 + Psest_4150 0.47 +0.6
4,333,730 + Psest_4150 0.47 +0.7
4,333,730 + Psest_4150 0.47 +0.7
4,333,730 + Psest_4150 0.47 -1.8
4,333,730 + Psest_4150 0.47 +1.5
4,333,730 + Psest_4150 0.47 -0.8
4,333,730 + Psest_4150 0.47 -0.4
4,333,730 + Psest_4150 0.47 +0.4
4,333,731 - Psest_4150 0.47 +0.7
4,333,731 - Psest_4150 0.47 +0.9
4,333,731 - Psest_4150 0.47 -1.5
4,333,731 - Psest_4150 0.47 -1.8
4,333,731 - Psest_4150 0.47 +0.8
4,333,731 - Psest_4150 0.47 -0.8
4,333,731 - Psest_4150 0.47 -1.5
4,333,733 + Psest_4150 0.47 -2.3
4,333,733 + Psest_4150 0.47 -0.3
4,333,733 + Psest_4150 0.47 +1.6
4,333,772 + Psest_4150 0.51 +0.7
4,333,772 + Psest_4150 0.51 -0.8
4,333,772 + Psest_4150 0.51 +0.3
4,333,772 + Psest_4150 0.51 +0.7
4,333,808 + Psest_4150 0.54 +0.1
4,333,808 + Psest_4150 0.54 -1.8
4,333,808 + Psest_4150 0.54 +1.1
4,333,808 + Psest_4150 0.54 -0.1
4,333,808 + Psest_4150 0.54 +0.6
4,333,823 + Psest_4150 0.55 +0.5
4,333,823 + Psest_4150 0.55 +0.4
4,333,823 + Psest_4150 0.55 -0.2
4,333,823 + Psest_4150 0.55 +0.1
4,333,823 + Psest_4150 0.55 +0.4
4,333,823 + Psest_4150 0.55 -0.1
4,333,823 + Psest_4150 0.55 +0.3
4,333,824 - Psest_4150 0.55 +0.2
4,333,824 - Psest_4150 0.55 -1.8
4,333,824 - Psest_4150 0.55 -1.1
4,333,824 - Psest_4150 0.55 -0.6
4,333,824 - Psest_4150 0.55 +0.7
4,333,824 - Psest_4150 0.55 +0.7
4,333,824 - Psest_4150 0.55 -0.8
4,333,835 + Psest_4150 0.56 -1.4
4,333,835 + Psest_4150 0.56 +0.7
4,333,835 + Psest_4150 0.56 +1.4
4,333,835 + Psest_4150 0.56 +1.0
4,333,835 + Psest_4150 0.56 +1.2
4,333,835 + Psest_4150 0.56 -0.3
4,333,836 - Psest_4150 0.56 +0.7
4,333,836 - Psest_4150 0.56 -0.1
4,334,039 + Psest_4150 0.73 -0.1
4,334,039 + Psest_4150 0.73 -0.4
4,334,039 + Psest_4150 0.73 +0.3
4,334,039 + Psest_4150 0.73 +0.0
4,334,039 + Psest_4150 0.73 +2.1
4,334,039 + Psest_4150 0.73 -0.9
4,334,039 + Psest_4150 0.73 -0.4
4,334,039 + Psest_4150 0.73 +0.1
4,334,039 + Psest_4150 0.73 -0.3
4,334,039 + Psest_4150 0.73 +2.3
4,334,039 + Psest_4150 0.73 -1.7
4,334,039 + Psest_4150 0.73 -0.0
4,334,039 + Psest_4150 0.73 +0.7
4,334,039 + Psest_4150 0.73 +0.1
4,334,039 + Psest_4150 0.73 -1.0
4,334,039 + Psest_4150 0.73 +0.4
4,334,039 + Psest_4150 0.73 +0.9
4,334,039 + Psest_4150 0.73 +0.5
4,334,040 - Psest_4150 0.73 +0.7
4,334,040 - Psest_4150 0.73 +0.9
4,334,040 - Psest_4150 0.73 +0.1
4,334,040 - Psest_4150 0.73 +0.4
4,334,040 - Psest_4150 0.73 +0.2
4,334,040 - Psest_4150 0.73 -0.4
4,334,040 - Psest_4150 0.73 +0.3
4,334,040 - Psest_4150 0.73 +0.7
4,334,040 - Psest_4150 0.73 -0.0
4,334,040 - Psest_4150 0.73 -0.0
4,334,040 - Psest_4150 0.73 -0.1
4,334,040 - Psest_4150 0.73 +0.5
4,334,040 - Psest_4150 0.73 -0.6
4,334,040 - Psest_4150 0.73 -1.4
4,334,040 - Psest_4150 0.73 +1.2
4,334,040 - Psest_4150 0.73 -3.2
4,334,040 - Psest_4150 0.73 +0.3
4,334,040 - Psest_4150 0.73 +1.5
4,334,094 + Psest_4150 0.78 -1.9
4,334,443 + +1.4
4,334,573 - Psest_4151 0.25 +0.8
4,334,938 + Psest_4151 0.79 +0.5
4,334,938 + Psest_4151 0.79 +0.5
4,334,938 + Psest_4151 0.79 -1.5
4,334,939 - Psest_4151 0.80 +1.3
4,334,939 - Psest_4151 0.80 -0.1
4,335,068 + -0.7
4,335,207 + Psest_4152 0.31 +0.4
4,335,207 + Psest_4152 0.31 +0.6
4,335,207 + Psest_4152 0.31 +0.7
4,335,207 + Psest_4152 0.31 +1.4
4,335,207 + Psest_4152 0.31 -2.7
4,335,207 + Psest_4152 0.31 -1.8
4,335,208 - Psest_4152 0.31 -0.1
4,335,213 + Psest_4152 0.32 -2.0
4,335,213 + Psest_4152 0.32 -0.6
4,335,214 - Psest_4152 0.33 +0.4
4,335,288 - Psest_4152 0.50 +0.5
4,335,346 - Psest_4152 0.63 -1.0
4,335,483 + +0.3
4,335,483 + -1.0
4,335,483 + -1.2
4,335,484 - -1.6
4,335,484 - +0.1
4,335,859 + +0.3
4,335,860 - +0.0
4,335,861 + -0.8
4,335,861 + -1.4
4,335,861 + -2.0
4,335,862 - -1.1
4,335,862 - -0.0
4,335,946 + +0.5
4,335,946 + +0.3
4,335,947 - -0.3
4,336,049 + Psest_4154 0.11 +0.7
4,336,049 + Psest_4154 0.11 -1.4
4,336,049 + Psest_4154 0.11 -0.0
4,336,049 + Psest_4154 0.11 -0.1
4,336,049 + Psest_4154 0.11 -0.8
4,336,050 - Psest_4154 0.11 -0.2

Or see this region's nucleotide sequence