Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2150

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2149 and Psest_2150 are separated by 95 nucleotidesPsest_2150 and Psest_2151 are separated by 289 nucleotides Psest_2149: Psest_2149 - Ku protein, prokaryotic, at 2,295,019 to 2,295,900 _2149 Psest_2150: Psest_2150 - DNA polymerase LigD, polymerase domain, at 2,295,996 to 2,296,919 _2150 Psest_2151: Psest_2151 - formate dehydrogenase, alpha subunit, proteobacterial-type, at 2,297,209 to 2,300,274 _2151 Position (kb) 2295 2296 2297Strain fitness (log2 ratio) -2 -1 0 1 2at 2295.062 kb on + strandat 2295.217 kb on + strand, within Psest_2149at 2295.232 kb on + strand, within Psest_2149at 2295.232 kb on + strand, within Psest_2149at 2295.232 kb on + strand, within Psest_2149at 2295.233 kb on - strand, within Psest_2149at 2295.233 kb on - strand, within Psest_2149at 2295.233 kb on - strand, within Psest_2149at 2295.233 kb on - strand, within Psest_2149at 2295.233 kb on - strand, within Psest_2149at 2295.233 kb on - strand, within Psest_2149at 2295.233 kb on - strand, within Psest_2149at 2295.334 kb on + strand, within Psest_2149at 2295.334 kb on + strand, within Psest_2149at 2295.334 kb on + strand, within Psest_2149at 2295.335 kb on - strand, within Psest_2149at 2295.335 kb on - strand, within Psest_2149at 2295.335 kb on - strand, within Psest_2149at 2295.335 kb on - strand, within Psest_2149at 2295.349 kb on + strand, within Psest_2149at 2295.349 kb on + strand, within Psest_2149at 2295.350 kb on - strand, within Psest_2149at 2295.350 kb on - strand, within Psest_2149at 2295.350 kb on - strand, within Psest_2149at 2295.350 kb on - strand, within Psest_2149at 2295.352 kb on + strand, within Psest_2149at 2295.353 kb on - strand, within Psest_2149at 2295.385 kb on + strand, within Psest_2149at 2295.446 kb on + strand, within Psest_2149at 2295.447 kb on - strand, within Psest_2149at 2295.447 kb on - strand, within Psest_2149at 2295.450 kb on + strand, within Psest_2149at 2295.450 kb on + strand, within Psest_2149at 2295.450 kb on + strand, within Psest_2149at 2295.450 kb on + strand, within Psest_2149at 2295.451 kb on - strand, within Psest_2149at 2295.451 kb on - strand, within Psest_2149at 2295.451 kb on - strand, within Psest_2149at 2295.541 kb on + strand, within Psest_2149at 2295.649 kb on + strand, within Psest_2149at 2295.649 kb on + strand, within Psest_2149at 2295.649 kb on + strand, within Psest_2149at 2295.649 kb on + strand, within Psest_2149at 2295.650 kb on - strand, within Psest_2149at 2296.110 kb on + strand, within Psest_2150at 2296.114 kb on - strand, within Psest_2150at 2296.114 kb on - strand, within Psest_2150at 2296.821 kb on + strand, within Psest_2150at 2297.176 kb on + strandat 2297.176 kb on + strandat 2297.176 kb on + strandat 2297.177 kb on - strandat 2297.358 kb on + strandat 2297.358 kb on + strandat 2297.358 kb on + strandat 2297.364 kb on + strandat 2297.364 kb on + strandat 2297.365 kb on - strandat 2297.365 kb on - strandat 2297.368 kb on + strandat 2297.368 kb on + strandat 2297.368 kb on + strandat 2297.368 kb on + strandat 2297.368 kb on + strandat 2297.369 kb on - strandat 2297.398 kb on + strandat 2297.398 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,295,062 + -0.0
2,295,217 + Psest_2149 0.22 -0.5
2,295,232 + Psest_2149 0.24 +0.5
2,295,232 + Psest_2149 0.24 -0.5
2,295,232 + Psest_2149 0.24 -0.5
2,295,233 - Psest_2149 0.24 +0.6
2,295,233 - Psest_2149 0.24 +0.5
2,295,233 - Psest_2149 0.24 -0.3
2,295,233 - Psest_2149 0.24 -0.6
2,295,233 - Psest_2149 0.24 -0.3
2,295,233 - Psest_2149 0.24 -0.2
2,295,233 - Psest_2149 0.24 +0.8
2,295,334 + Psest_2149 0.36 +0.4
2,295,334 + Psest_2149 0.36 -0.2
2,295,334 + Psest_2149 0.36 +0.2
2,295,335 - Psest_2149 0.36 +1.5
2,295,335 - Psest_2149 0.36 +0.9
2,295,335 - Psest_2149 0.36 -0.2
2,295,335 - Psest_2149 0.36 -2.4
2,295,349 + Psest_2149 0.37 +0.7
2,295,349 + Psest_2149 0.37 -0.2
2,295,350 - Psest_2149 0.38 -1.3
2,295,350 - Psest_2149 0.38 +0.6
2,295,350 - Psest_2149 0.38 -0.2
2,295,350 - Psest_2149 0.38 -0.2
2,295,352 + Psest_2149 0.38 -0.7
2,295,353 - Psest_2149 0.38 +0.3
2,295,385 + Psest_2149 0.41 -0.3
2,295,446 + Psest_2149 0.48 -1.3
2,295,447 - Psest_2149 0.49 +0.0
2,295,447 - Psest_2149 0.49 +0.3
2,295,450 + Psest_2149 0.49 +0.6
2,295,450 + Psest_2149 0.49 -0.3
2,295,450 + Psest_2149 0.49 -1.2
2,295,450 + Psest_2149 0.49 +0.4
2,295,451 - Psest_2149 0.49 +0.3
2,295,451 - Psest_2149 0.49 +0.2
2,295,451 - Psest_2149 0.49 -1.6
2,295,541 + Psest_2149 0.59 -0.1
2,295,649 + Psest_2149 0.71 +0.1
2,295,649 + Psest_2149 0.71 +0.1
2,295,649 + Psest_2149 0.71 +0.7
2,295,649 + Psest_2149 0.71 +0.6
2,295,650 - Psest_2149 0.72 -0.3
2,296,110 + Psest_2150 0.12 +2.3
2,296,114 - Psest_2150 0.13 +0.7
2,296,114 - Psest_2150 0.13 +0.6
2,296,821 + Psest_2150 0.89 +0.2
2,297,176 + +0.1
2,297,176 + -0.3
2,297,176 + -0.4
2,297,177 - +0.9
2,297,358 + +0.1
2,297,358 + -0.6
2,297,358 + -0.2
2,297,364 + -0.1
2,297,364 + -0.5
2,297,365 - +0.5
2,297,365 - -1.0
2,297,368 + +0.3
2,297,368 + +0.1
2,297,368 + +0.2
2,297,368 + +0.5
2,297,368 + -0.1
2,297,369 - +0.6
2,297,398 + +0.1
2,297,398 + +0.5

Or see this region's nucleotide sequence