Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1585

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1584 and Psest_1585 are separated by 44 nucleotidesPsest_1585 and Psest_1586 are separated by 17 nucleotidesPsest_1586 and Psest_1587 are separated by 30 nucleotides Psest_1584: Psest_1584 - Arabinose efflux permease, at 1,688,574 to 1,689,932 _1584 Psest_1585: Psest_1585 - amidohydrolase, at 1,689,977 to 1,691,248 _1585 Psest_1586: Psest_1586 - Transcriptional regulator, at 1,691,266 to 1,692,156 _1586 Psest_1587: Psest_1587 - hypothetical protein, at 1,692,187 to 1,692,885 _1587 Position (kb) 1689 1690 1691 1692Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1689.164 kb on - strand, within Psest_1584at 1689.164 kb on - strand, within Psest_1584at 1689.178 kb on + strand, within Psest_1584at 1689.178 kb on + strand, within Psest_1584at 1689.178 kb on + strand, within Psest_1584at 1689.179 kb on - strand, within Psest_1584at 1689.179 kb on - strand, within Psest_1584at 1689.179 kb on - strand, within Psest_1584at 1689.179 kb on - strand, within Psest_1584at 1689.447 kb on + strand, within Psest_1584at 1689.447 kb on + strand, within Psest_1584at 1689.448 kb on - strand, within Psest_1584at 1689.484 kb on + strand, within Psest_1584at 1689.709 kb on + strand, within Psest_1584at 1689.709 kb on + strand, within Psest_1584at 1689.710 kb on - strand, within Psest_1584at 1689.710 kb on - strand, within Psest_1584at 1689.710 kb on - strand, within Psest_1584at 1689.710 kb on - strand, within Psest_1584at 1689.790 kb on + strand, within Psest_1584at 1689.790 kb on + strand, within Psest_1584at 1689.791 kb on - strand, within Psest_1584at 1689.791 kb on - strand, within Psest_1584at 1689.955 kb on + strandat 1689.956 kb on - strandat 1690.054 kb on - strandat 1690.132 kb on - strand, within Psest_1585at 1690.434 kb on + strand, within Psest_1585at 1690.434 kb on + strand, within Psest_1585at 1690.434 kb on + strand, within Psest_1585at 1690.434 kb on + strand, within Psest_1585at 1690.434 kb on + strand, within Psest_1585at 1690.434 kb on + strand, within Psest_1585at 1690.434 kb on + strand, within Psest_1585at 1690.434 kb on + strand, within Psest_1585at 1690.434 kb on + strand, within Psest_1585at 1690.435 kb on - strand, within Psest_1585at 1690.435 kb on - strand, within Psest_1585at 1690.435 kb on - strand, within Psest_1585at 1690.435 kb on - strand, within Psest_1585at 1690.561 kb on + strand, within Psest_1585at 1690.608 kb on - strand, within Psest_1585at 1690.674 kb on + strand, within Psest_1585at 1691.047 kb on - strand, within Psest_1585at 1691.179 kb on + strandat 1691.179 kb on + strandat 1691.179 kb on + strandat 1691.179 kb on + strandat 1691.180 kb on - strandat 1691.180 kb on - strandat 1691.180 kb on - strandat 1691.180 kb on - strandat 1691.180 kb on - strandat 1691.196 kb on + strandat 1691.196 kb on + strandat 1691.197 kb on - strandat 1691.197 kb on - strandat 1691.197 kb on - strandat 1691.197 kb on - strandat 1691.197 kb on - strandat 1691.294 kb on + strandat 1691.294 kb on + strandat 1691.419 kb on + strand, within Psest_1586at 1691.419 kb on + strand, within Psest_1586at 1691.419 kb on + strand, within Psest_1586at 1691.420 kb on - strand, within Psest_1586at 1691.420 kb on - strand, within Psest_1586at 1691.420 kb on - strand, within Psest_1586at 1691.420 kb on - strand, within Psest_1586at 1691.420 kb on - strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.656 kb on + strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.657 kb on - strand, within Psest_1586at 1691.660 kb on + strand, within Psest_1586at 1691.660 kb on + strand, within Psest_1586at 1691.660 kb on + strand, within Psest_1586at 1691.660 kb on + strand, within Psest_1586at 1691.660 kb on + strand, within Psest_1586at 1691.661 kb on - strand, within Psest_1586at 1691.661 kb on - strand, within Psest_1586at 1691.661 kb on - strand, within Psest_1586at 1691.808 kb on + strand, within Psest_1586at 1691.809 kb on - strand, within Psest_1586at 1691.951 kb on + strand, within Psest_1586at 1691.952 kb on - strand, within Psest_1586at 1691.952 kb on - strand, within Psest_1586at 1691.968 kb on - strand, within Psest_1586at 1691.974 kb on + strand, within Psest_1586at 1691.974 kb on + strand, within Psest_1586at 1691.975 kb on - strand, within Psest_1586at 1692.154 kb on + strandat 1692.154 kb on + strandat 1692.155 kb on - strandat 1692.155 kb on - strandat 1692.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,689,164 - Psest_1584 0.43 -0.1
1,689,164 - Psest_1584 0.43 +0.3
1,689,178 + Psest_1584 0.44 +0.1
1,689,178 + Psest_1584 0.44 +0.4
1,689,178 + Psest_1584 0.44 -1.0
1,689,179 - Psest_1584 0.45 +0.4
1,689,179 - Psest_1584 0.45 -0.1
1,689,179 - Psest_1584 0.45 +1.1
1,689,179 - Psest_1584 0.45 +0.6
1,689,447 + Psest_1584 0.64 -0.4
1,689,447 + Psest_1584 0.64 +0.4
1,689,448 - Psest_1584 0.64 +0.4
1,689,484 + Psest_1584 0.67 +0.1
1,689,709 + Psest_1584 0.84 -0.3
1,689,709 + Psest_1584 0.84 -0.0
1,689,710 - Psest_1584 0.84 -0.1
1,689,710 - Psest_1584 0.84 -0.8
1,689,710 - Psest_1584 0.84 -1.0
1,689,710 - Psest_1584 0.84 +0.6
1,689,790 + Psest_1584 0.89 +0.4
1,689,790 + Psest_1584 0.89 -0.7
1,689,791 - Psest_1584 0.90 -0.1
1,689,791 - Psest_1584 0.90 +0.3
1,689,955 + -0.9
1,689,956 - +0.1
1,690,054 - +0.6
1,690,132 - Psest_1585 0.12 +1.1
1,690,434 + Psest_1585 0.36 +0.9
1,690,434 + Psest_1585 0.36 -0.1
1,690,434 + Psest_1585 0.36 +0.2
1,690,434 + Psest_1585 0.36 +0.5
1,690,434 + Psest_1585 0.36 +0.1
1,690,434 + Psest_1585 0.36 +0.7
1,690,434 + Psest_1585 0.36 +0.3
1,690,434 + Psest_1585 0.36 +0.9
1,690,434 + Psest_1585 0.36 +1.5
1,690,435 - Psest_1585 0.36 -0.9
1,690,435 - Psest_1585 0.36 -4.8
1,690,435 - Psest_1585 0.36 +0.5
1,690,435 - Psest_1585 0.36 +0.3
1,690,561 + Psest_1585 0.46 +0.2
1,690,608 - Psest_1585 0.50 -0.7
1,690,674 + Psest_1585 0.55 +1.3
1,691,047 - Psest_1585 0.84 +1.1
1,691,179 + +0.2
1,691,179 + +1.7
1,691,179 + +0.3
1,691,179 + -0.1
1,691,180 - +0.1
1,691,180 - -1.3
1,691,180 - +0.1
1,691,180 - -0.1
1,691,180 - +0.2
1,691,196 + +0.0
1,691,196 + +0.3
1,691,197 - +0.7
1,691,197 - +0.7
1,691,197 - -0.2
1,691,197 - -1.8
1,691,197 - +0.8
1,691,294 + +0.0
1,691,294 + -0.2
1,691,419 + Psest_1586 0.17 -0.1
1,691,419 + Psest_1586 0.17 +0.1
1,691,419 + Psest_1586 0.17 -0.2
1,691,420 - Psest_1586 0.17 +0.3
1,691,420 - Psest_1586 0.17 -0.1
1,691,420 - Psest_1586 0.17 +0.4
1,691,420 - Psest_1586 0.17 -0.4
1,691,420 - Psest_1586 0.17 -0.1
1,691,656 + Psest_1586 0.44 +1.1
1,691,656 + Psest_1586 0.44 +0.8
1,691,656 + Psest_1586 0.44 +0.4
1,691,656 + Psest_1586 0.44 -0.1
1,691,656 + Psest_1586 0.44 -1.4
1,691,656 + Psest_1586 0.44 +0.2
1,691,656 + Psest_1586 0.44 +0.5
1,691,656 + Psest_1586 0.44 -0.6
1,691,656 + Psest_1586 0.44 -1.0
1,691,656 + Psest_1586 0.44 +0.2
1,691,656 + Psest_1586 0.44 -0.7
1,691,656 + Psest_1586 0.44 +0.3
1,691,657 - Psest_1586 0.44 +0.7
1,691,657 - Psest_1586 0.44 +0.7
1,691,657 - Psest_1586 0.44 +0.9
1,691,657 - Psest_1586 0.44 -0.2
1,691,657 - Psest_1586 0.44 +0.2
1,691,657 - Psest_1586 0.44 +0.1
1,691,657 - Psest_1586 0.44 -1.0
1,691,657 - Psest_1586 0.44 -0.6
1,691,657 - Psest_1586 0.44 +0.9
1,691,657 - Psest_1586 0.44 +0.3
1,691,657 - Psest_1586 0.44 -0.2
1,691,657 - Psest_1586 0.44 -0.1
1,691,657 - Psest_1586 0.44 -1.2
1,691,657 - Psest_1586 0.44 +0.2
1,691,657 - Psest_1586 0.44 -0.6
1,691,660 + Psest_1586 0.44 -0.3
1,691,660 + Psest_1586 0.44 -0.3
1,691,660 + Psest_1586 0.44 -0.1
1,691,660 + Psest_1586 0.44 +0.0
1,691,660 + Psest_1586 0.44 +1.2
1,691,661 - Psest_1586 0.44 +0.4
1,691,661 - Psest_1586 0.44 -0.1
1,691,661 - Psest_1586 0.44 -0.7
1,691,808 + Psest_1586 0.61 +1.1
1,691,809 - Psest_1586 0.61 -2.0
1,691,951 + Psest_1586 0.77 +0.6
1,691,952 - Psest_1586 0.77 +0.5
1,691,952 - Psest_1586 0.77 +1.0
1,691,968 - Psest_1586 0.79 -0.9
1,691,974 + Psest_1586 0.79 +0.5
1,691,974 + Psest_1586 0.79 +1.7
1,691,975 - Psest_1586 0.80 -1.7
1,692,154 + -1.1
1,692,154 + +0.3
1,692,155 - +0.8
1,692,155 - +0.7
1,692,155 - +0.3

Or see this region's nucleotide sequence