Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0321 and Psest_0322 are separated by 55 nucleotides Psest_0322 and Psest_0323 are separated by 222 nucleotides Psest_0323 and Psest_0324 are separated by 14 nucleotides
Psest_0321: Psest_0321 - Predicted membrane protein, at 344,556 to 345,317
_0321
Psest_0322: Psest_0322 - hypothetical protein, at 345,373 to 345,708
_0322
Psest_0323: Psest_0323 - S-adenosylmethionine synthetase, at 345,931 to 347,121
_0323
Psest_0324: Psest_0324 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 347,136 to 348,125
_0324
Position (kb) 345
346
347
348 Strain fitness (log2 ratio) -2
-1
0
1
2 at 344.946 kb on + strand, within Psest_0321 at 344.946 kb on + strand, within Psest_0321 at 345.111 kb on + strand, within Psest_0321 at 345.111 kb on + strand, within Psest_0321 at 345.111 kb on + strand, within Psest_0321 at 345.111 kb on + strand, within Psest_0321 at 345.111 kb on + strand, within Psest_0321 at 345.112 kb on - strand, within Psest_0321 at 345.112 kb on - strand, within Psest_0321 at 345.112 kb on - strand, within Psest_0321 at 345.171 kb on + strand, within Psest_0321 at 345.171 kb on + strand, within Psest_0321 at 345.172 kb on - strand, within Psest_0321 at 345.172 kb on - strand, within Psest_0321 at 345.172 kb on - strand, within Psest_0321 at 345.172 kb on - strand, within Psest_0321 at 345.172 kb on - strand, within Psest_0321 at 345.201 kb on + strand, within Psest_0321 at 345.201 kb on + strand, within Psest_0321 at 345.201 kb on + strand, within Psest_0321 at 345.201 kb on + strand, within Psest_0321 at 345.201 kb on + strand, within Psest_0321 at 345.202 kb on - strand, within Psest_0321 at 345.202 kb on - strand, within Psest_0321 at 345.358 kb on + strand at 345.358 kb on + strand at 345.359 kb on - strand at 345.359 kb on - strand at 345.374 kb on + strand at 345.374 kb on + strand at 345.374 kb on + strand at 345.374 kb on + strand at 345.374 kb on + strand at 345.374 kb on + strand at 345.374 kb on + strand at 345.375 kb on - strand at 345.375 kb on - strand at 345.702 kb on + strand at 345.702 kb on + strand at 345.702 kb on + strand at 345.702 kb on + strand at 345.702 kb on + strand at 345.702 kb on + strand at 345.703 kb on - strand at 345.703 kb on - strand at 345.703 kb on - strand at 345.703 kb on - strand at 345.703 kb on - strand at 345.703 kb on - strand at 345.723 kb on + strand at 345.723 kb on + strand at 345.723 kb on + strand at 345.724 kb on - strand at 345.724 kb on - strand at 345.724 kb on - strand at 345.724 kb on - strand at 345.724 kb on - strand at 345.724 kb on - strand at 345.724 kb on - strand at 345.778 kb on - strand at 345.778 kb on - strand at 345.778 kb on - strand at 345.778 kb on - strand at 345.778 kb on - strand at 345.832 kb on - strand at 347.135 kb on - strand at 347.135 kb on - strand at 347.135 kb on - strand at 347.135 kb on - strand at 347.135 kb on - strand at 347.135 kb on - strand at 347.219 kb on - strand at 347.219 kb on - strand at 347.219 kb on - strand at 347.219 kb on - strand at 347.219 kb on - strand at 347.219 kb on - strand at 347.219 kb on - strand at 347.219 kb on - strand at 347.900 kb on - strand, within Psest_0324 at 347.900 kb on - strand, within Psest_0324 at 348.046 kb on - strand at 348.046 kb on - strand at 348.046 kb on - strand at 348.115 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 344,946 + Psest_0321 0.51 -0.3 344,946 + Psest_0321 0.51 +0.1 345,111 + Psest_0321 0.73 +0.8 345,111 + Psest_0321 0.73 +0.2 345,111 + Psest_0321 0.73 +0.3 345,111 + Psest_0321 0.73 -1.6 345,111 + Psest_0321 0.73 +1.5 345,112 - Psest_0321 0.73 -0.4 345,112 - Psest_0321 0.73 -0.7 345,112 - Psest_0321 0.73 -0.2 345,171 + Psest_0321 0.81 -1.2 345,171 + Psest_0321 0.81 -0.7 345,172 - Psest_0321 0.81 -0.2 345,172 - Psest_0321 0.81 +0.8 345,172 - Psest_0321 0.81 -0.3 345,172 - Psest_0321 0.81 -1.6 345,172 - Psest_0321 0.81 +0.3 345,201 + Psest_0321 0.85 +0.4 345,201 + Psest_0321 0.85 -1.2 345,201 + Psest_0321 0.85 -0.9 345,201 + Psest_0321 0.85 +0.6 345,201 + Psest_0321 0.85 +0.2 345,202 - Psest_0321 0.85 +1.8 345,202 - Psest_0321 0.85 -0.2 345,358 + +1.4 345,358 + -0.2 345,359 - +0.9 345,359 - -0.6 345,374 + -0.3 345,374 + +2.0 345,374 + +0.7 345,374 + -1.2 345,374 + -1.8 345,374 + +0.0 345,374 + -0.7 345,375 - -1.0 345,375 - -0.9 345,702 + +0.6 345,702 + -0.3 345,702 + +0.9 345,702 + -2.1 345,702 + +0.0 345,702 + -1.3 345,703 - -0.5 345,703 - +0.1 345,703 - +1.2 345,703 - +1.8 345,703 - -0.1 345,703 - -0.8 345,723 + +1.3 345,723 + +0.6 345,723 + -0.6 345,724 - -0.8 345,724 - -0.2 345,724 - +0.1 345,724 - -2.6 345,724 - +1.0 345,724 - +1.5 345,724 - -1.2 345,778 - -0.7 345,778 - -1.3 345,778 - -0.8 345,778 - +2.0 345,778 - +1.2 345,832 - -0.1 347,135 - +0.6 347,135 - -0.4 347,135 - +1.2 347,135 - +0.3 347,135 - +1.1 347,135 - -1.6 347,219 - +0.1 347,219 - +0.9 347,219 - +0.3 347,219 - +0.5 347,219 - -0.1 347,219 - -0.1 347,219 - +0.9 347,219 - +1.9 347,900 - Psest_0324 0.77 +0.6 347,900 - Psest_0324 0.77 -0.8 348,046 - -1.1 348,046 - +1.1 348,046 - +0.7 348,115 - -0.1
Or see this region's nucleotide sequence