Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3125

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3123 and Psest_3124 overlap by 4 nucleotidesPsest_3124 and Psest_3125 are separated by 109 nucleotidesPsest_3125 and Psest_3126 are separated by 74 nucleotides Psest_3123: Psest_3123 - dihydroorotase, homodimeric type, at 3,299,633 to 3,300,676 _3123 Psest_3124: Psest_3124 - ribonuclease T, at 3,300,673 to 3,301,347 _3124 Psest_3125: Psest_3125 - threonine synthase, at 3,301,457 to 3,302,866 _3125 Psest_3126: Psest_3126 - Homoserine dehydrogenase, at 3,302,941 to 3,304,245 _3126 Position (kb) 3301 3302 3303Strain fitness (log2 ratio) -1 0 1 2at 3300.458 kb on + strand, within Psest_3123at 3300.458 kb on + strand, within Psest_3123at 3300.458 kb on + strand, within Psest_3123at 3300.459 kb on - strand, within Psest_3123at 3300.550 kb on + strand, within Psest_3123at 3301.016 kb on + strand, within Psest_3124at 3301.016 kb on + strand, within Psest_3124at 3302.943 kb on - strandat 3302.943 kb on - strandat 3302.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,300,458 + Psest_3123 0.79 -0.4
3,300,458 + Psest_3123 0.79 +0.9
3,300,458 + Psest_3123 0.79 -0.7
3,300,459 - Psest_3123 0.79 +1.9
3,300,550 + Psest_3123 0.88 +0.3
3,301,016 + Psest_3124 0.51 -0.1
3,301,016 + Psest_3124 0.51 -1.1
3,302,943 - -0.5
3,302,943 - -1.3
3,302,943 - +0.4

Or see this region's nucleotide sequence