Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1667 and Psest_1668 overlap by 8 nucleotides Psest_1668 and Psest_1669 overlap by 4 nucleotides Psest_1669 and Psest_1670 are separated by 5 nucleotides Psest_1670 and Psest_1671 are separated by 148 nucleotides
Psest_1667: Psest_1667 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 1,775,394 to 1,776,641
_1667
Psest_1668: Psest_1668 - lipoprotein releasing system, ATP-binding protein, at 1,776,634 to 1,777,344
_1668
Psest_1669: Psest_1669 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 1,777,341 to 1,778,588
_1669
Psest_1670: Psest_1670 - Uncharacterized protein conserved in bacteria, at 1,778,594 to 1,779,109
_1670
Psest_1671: Psest_1671 - DNA internalization-related competence protein ComEC/Rec2, at 1,779,258 to 1,781,483
_1671
Position (kb)
1777
1778
1779 Strain fitness (log2 ratio)
-2
-1
0
1 at 1778.586 kb on + strand at 1778.586 kb on + strand at 1779.174 kb on - strand at 1779.174 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.356 kb on - strand at 1779.371 kb on + strand at 1779.371 kb on + strand at 1779.587 kb on + strand, within Psest_1671
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,778,586 + +0.5 1,778,586 + +1.1 1,779,174 - -0.5 1,779,174 - +1.7 1,779,188 - -0.6 1,779,188 - -0.5 1,779,188 - -1.9 1,779,188 - +0.9 1,779,188 - -1.3 1,779,188 - -0.5 1,779,188 - -0.5 1,779,188 - -1.4 1,779,188 - -0.5 1,779,356 - +0.7 1,779,371 + +1.1 1,779,371 + +0.7 1,779,587 + Psest_1671 0.15 -1.4
Or see this region's nucleotide sequence