Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3715

Experiment: D-Gluconic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Gluconic Acid (C)
3,882,311	-				+0.1
3,882,311	-				-0.1
3,882,980	-				+0.7
3,882,980	-				+1.2
3,883,032	-				-0.1
3,883,101	-		Psest_3715	0.11	+0.4
3,883,101	-		Psest_3715	0.11	-0.2
3,883,109	+		Psest_3715	0.11	+0.9
3,883,109	+		Psest_3715	0.11	-0.4
3,883,110	-		Psest_3715	0.12	+0.9
3,883,110	-		Psest_3715	0.12	+0.1
3,883,110	-		Psest_3715	0.12	+0.9
3,883,110	-		Psest_3715	0.12	+0.8
3,883,235	+		Psest_3715	0.18	+1.4
3,883,235	+		Psest_3715	0.18	+0.5
3,883,235	+		Psest_3715	0.18	-0.9
3,883,236	-		Psest_3715	0.18	+0.6
3,883,236	-		Psest_3715	0.18	+0.9
3,883,236	-		Psest_3715	0.18	+0.4
3,883,236	-		Psest_3715	0.18	+0.9
3,883,236	-		Psest_3715	0.18	+0.4
3,883,244	+		Psest_3715	0.18	+0.8
3,883,244	+		Psest_3715	0.18	+1.2
3,883,244	+		Psest_3715	0.18	+1.1
3,883,245	-		Psest_3715	0.18	+0.8
3,883,245	-		Psest_3715	0.18	+1.4
3,883,245	-		Psest_3715	0.18	-0.4
3,883,245	-		Psest_3715	0.18	+0.6
3,883,245	-		Psest_3715	0.18	+0.4
3,883,392	-		Psest_3715	0.25	+0.6
3,883,392	-		Psest_3715	0.25	-0.8
3,883,392	-		Psest_3715	0.25	-0.6
3,883,404	+		Psest_3715	0.26	-0.0
3,883,405	-		Psest_3715	0.26	+0.1
3,883,405	-		Psest_3715	0.26	-0.1
3,883,405	-		Psest_3715	0.26	+1.5
3,883,627	-		Psest_3715	0.36	-0.2
3,883,647	+		Psest_3715	0.37	+1.1
3,883,648	-		Psest_3715	0.37	+0.7
3,883,648	-		Psest_3715	0.37	+0.3
3,883,696	+		Psest_3715	0.40	+1.1
3,883,706	+		Psest_3715	0.40	+0.4
3,883,706	+		Psest_3715	0.40	+1.0
3,883,706	+		Psest_3715	0.40	+0.5
3,883,706	+		Psest_3715	0.40	-0.0
3,883,706	+		Psest_3715	0.40	+0.5
3,883,706	+		Psest_3715	0.40	-1.6
3,883,706	+		Psest_3715	0.40	-0.1
3,883,706	+		Psest_3715	0.40	-1.9
3,883,707	-		Psest_3715	0.40	+0.6
3,883,707	-		Psest_3715	0.40	-0.2
3,883,707	-		Psest_3715	0.40	+0.3
3,883,733	+		Psest_3715	0.41	+0.7
3,883,733	+		Psest_3715	0.41	+0.6
3,883,734	-		Psest_3715	0.41	-0.4
3,883,763	+		Psest_3715	0.43	+1.2
3,883,810	+		Psest_3715	0.45	+1.4
3,883,810	+		Psest_3715	0.45	-0.6
3,883,811	-		Psest_3715	0.45	+0.6
3,883,811	-		Psest_3715	0.45	+0.1
3,883,815	-		Psest_3715	0.45	-0.1
3,884,016	-		Psest_3715	0.55	+0.7
3,884,132	-		Psest_3715	0.61	+1.4
3,884,156	+		Psest_3715	0.62	+1.1
3,884,156	+		Psest_3715	0.62	+1.4
3,884,157	-		Psest_3715	0.62	-0.2
3,884,157	-		Psest_3715	0.62	+1.3
3,884,186	+		Psest_3715	0.63	-0.2
3,884,186	+		Psest_3715	0.63	+0.6
3,884,186	+		Psest_3715	0.63	+0.8
3,884,186	+		Psest_3715	0.63	+0.3
3,884,186	+		Psest_3715	0.63	-0.6
3,884,186	+		Psest_3715	0.63	+0.8
3,884,186	+		Psest_3715	0.63	-2.4
3,884,186	+		Psest_3715	0.63	+0.7
3,884,187	-		Psest_3715	0.63	+0.7
3,884,187	-		Psest_3715	0.63	+0.9
3,884,187	-		Psest_3715	0.63	+1.9
3,884,187	-		Psest_3715	0.63	+0.2
3,884,189	+		Psest_3715	0.63	-0.1
3,884,190	-		Psest_3715	0.63	+1.1
3,884,190	-		Psest_3715	0.63	-0.2
3,884,190	-		Psest_3715	0.63	+1.2
3,884,215	+		Psest_3715	0.65	+2.6
3,884,216	-		Psest_3715	0.65	-0.4
3,884,224	+		Psest_3715	0.65	+0.1
3,884,224	+		Psest_3715	0.65	+0.9
3,884,406	+		Psest_3715	0.74	+0.5
3,884,407	-		Psest_3715	0.74	+0.5
3,884,407	-		Psest_3715	0.74	+0.5
3,884,429	+		Psest_3715	0.75	+1.0
3,884,429	+		Psest_3715	0.75	+1.1
3,884,430	-		Psest_3715	0.75	+0.7
3,884,430	-		Psest_3715	0.75	+0.5
3,884,505	-		Psest_3715	0.79	+0.5
3,884,624	-		Psest_3715	0.84	+0.2
3,884,624	-		Psest_3715	0.84	-0.1
3,884,624	-		Psest_3715	0.84	-0.4
3,884,757	+				+1.0
3,884,757	+				+0.9
3,884,758	-				+0.1
3,884,903	+				+1.3
3,884,903	+				+0.5
3,884,942	+				+0.9
3,884,942	+				+1.1
3,884,951	+				+0.3
3,884,951	+				+0.6
3,884,951	+				+0.1
3,884,951	+				-0.4
3,884,952	-				+0.2
3,884,952	-				+0.3
3,884,952	-				+0.9
3,884,952	-				-0.6
3,884,952	-				-1.4
3,885,081	+		Psest_3716	0.14	+0.7
3,885,082	-		Psest_3716	0.14	-1.2
3,885,136	+		Psest_3716	0.25	-2.0
3,885,137	-		Psest_3716	0.25	+1.2
3,885,137	-		Psest_3716	0.25	+0.4
3,885,137	-		Psest_3716	0.25	-0.5
3,885,179	+		Psest_3716	0.33	+3.0
3,885,179	+		Psest_3716	0.33	+0.7
3,885,179	+		Psest_3716	0.33	+0.8
3,885,180	-		Psest_3716	0.33	-0.3
3,885,180	-		Psest_3716	0.33	+0.6
3,885,260	+		Psest_3716	0.48	+0.9
3,885,260	+		Psest_3716	0.48	+0.2
3,885,260	+		Psest_3716	0.48	+0.2
3,885,260	+		Psest_3716	0.48	-0.1
3,885,362	+		Psest_3716	0.67	+0.8
3,885,363	-		Psest_3716	0.68	+0.1
3,885,363	-		Psest_3716	0.68	+0.3
3,885,363	-		Psest_3716	0.68	+1.4
3,885,364	+		Psest_3716	0.68	+1.6
3,885,364	+		Psest_3716	0.68	-1.4
3,885,364	+		Psest_3716	0.68	-0.2
3,885,364	+		Psest_3716	0.68	-0.2
3,885,364	+		Psest_3716	0.68	+1.2
3,885,365	-		Psest_3716	0.68	+0.7
3,885,365	-		Psest_3716	0.68	+0.8
3,885,365	-		Psest_3716	0.68	+1.6
3,885,368	+		Psest_3716	0.69	+1.7
3,885,368	+		Psest_3716	0.69	+0.9
3,885,385	-		Psest_3716	0.72	+1.3
3,885,385	-		Psest_3716	0.72	-0.5
3,885,386	+		Psest_3716	0.72	+0.4
3,885,386	+		Psest_3716	0.72	+0.3
3,885,387	-		Psest_3716	0.72	+3.0
3,885,387	-		Psest_3716	0.72	-0.2
3,885,442	+		Psest_3716	0.83	+0.8
3,885,443	-		Psest_3716	0.83	-0.1
3,885,443	-		Psest_3716	0.83	+0.4
3,885,443	-		Psest_3716	0.83	+0.8
3,885,443	-		Psest_3716	0.83	+1.5
3,885,502	-				+0.9
3,885,556	-				+0.6
3,885,562	-				-0.5
3,885,562	-				-1.0
3,885,598	+		Psest_3717	0.11	+0.7
3,885,620	-		Psest_3717	0.14	+1.8
3,885,647	-		Psest_3717	0.19	-1.7
3,885,684	-		Psest_3717	0.25	+1.7
3,885,900	+		Psest_3717	0.59	+0.4
3,885,900	+		Psest_3717	0.59	+2.1
3,885,900	+		Psest_3717	0.59	+0.4
3,885,900	+		Psest_3717	0.59	-0.2
3,885,901	-		Psest_3717	0.59	+1.1
3,885,901	-		Psest_3717	0.59	+0.3
3,885,901	-		Psest_3717	0.59	+3.3
3,885,931	+		Psest_3717	0.64	+1.2
3,885,931	+		Psest_3717	0.64	+0.4
3,885,932	-		Psest_3717	0.64	+0.3