Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0547 and Psest_0548 overlap by 4 nucleotides Psest_0548 and Psest_0549 are separated by 163 nucleotides Psest_0549 and Psest_0550 are separated by 247 nucleotides
Psest_0547: Psest_0547 - Urease accessory protein UreF, at 601,629 to 602,321
_0547
Psest_0548: Psest_0548 - Urease accessory protein UreE, at 602,318 to 602,818
_0548
Psest_0549: Psest_0549 - Predicted acetyltransferase, at 602,982 to 603,485
_0549
Psest_0550: Psest_0550 - Predicted permease, DMT superfamily, at 603,733 to 604,605
_0550
Position (kb) 602
603
604 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 602.239 kb on + strand, within Psest_0547 at 602.239 kb on + strand, within Psest_0547 at 602.239 kb on + strand, within Psest_0547 at 602.240 kb on - strand, within Psest_0547 at 602.246 kb on - strand, within Psest_0547 at 602.327 kb on + strand at 602.356 kb on - strand at 602.484 kb on + strand, within Psest_0548 at 602.484 kb on + strand, within Psest_0548 at 602.484 kb on + strand, within Psest_0548 at 602.484 kb on + strand, within Psest_0548 at 602.485 kb on - strand, within Psest_0548 at 602.485 kb on - strand, within Psest_0548 at 602.485 kb on - strand, within Psest_0548 at 602.485 kb on - strand, within Psest_0548 at 602.485 kb on - strand, within Psest_0548 at 602.716 kb on + strand, within Psest_0548 at 602.754 kb on + strand, within Psest_0548 at 602.754 kb on + strand, within Psest_0548 at 602.755 kb on - strand, within Psest_0548 at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.880 kb on + strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.881 kb on - strand at 602.883 kb on - strand at 602.883 kb on - strand at 602.883 kb on - strand at 602.945 kb on + strand at 602.945 kb on + strand at 602.946 kb on - strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.007 kb on + strand at 603.025 kb on + strand at 603.026 kb on - strand at 603.164 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.316 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.418 kb on + strand, within Psest_0549 at 603.419 kb on - strand, within Psest_0549 at 603.419 kb on - strand, within Psest_0549 at 603.453 kb on - strand at 603.481 kb on + strand at 603.482 kb on - strand at 603.482 kb on - strand at 603.482 kb on - strand at 603.544 kb on + strand at 603.757 kb on + strand at 603.758 kb on - strand at 603.774 kb on - strand at 603.866 kb on - strand, within Psest_0550 at 603.866 kb on - strand, within Psest_0550 at 603.866 kb on - strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.223 kb on - strand, within Psest_0550 at 604.266 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.456 kb on + strand, within Psest_0550
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 602,239 + Psest_0547 0.88 +0.3 602,239 + Psest_0547 0.88 -0.2 602,239 + Psest_0547 0.88 -1.1 602,240 - Psest_0547 0.88 -1.3 602,246 - Psest_0547 0.89 +1.1 602,327 + +0.8 602,356 - -1.0 602,484 + Psest_0548 0.33 -1.7 602,484 + Psest_0548 0.33 +1.5 602,484 + Psest_0548 0.33 -0.2 602,484 + Psest_0548 0.33 +0.2 602,485 - Psest_0548 0.33 +0.4 602,485 - Psest_0548 0.33 +0.4 602,485 - Psest_0548 0.33 -0.0 602,485 - Psest_0548 0.33 -1.9 602,485 - Psest_0548 0.33 -1.6 602,716 + Psest_0548 0.79 +0.4 602,754 + Psest_0548 0.87 -0.0 602,754 + Psest_0548 0.87 -4.0 602,755 - Psest_0548 0.87 -0.8 602,880 + +0.9 602,880 + -1.9 602,880 + -1.1 602,880 + +0.7 602,880 + +0.4 602,880 + +0.1 602,880 + +0.2 602,880 + -2.1 602,880 + -0.0 602,881 - -2.8 602,881 - -0.4 602,881 - +1.4 602,881 - +1.1 602,881 - +2.1 602,881 - -1.5 602,881 - +0.7 602,881 - +0.7 602,881 - -0.4 602,883 - -0.1 602,883 - -2.5 602,883 - -0.9 602,945 + -0.3 602,945 + +0.4 602,946 - +2.1 603,007 + -0.9 603,007 + -0.9 603,007 + +0.4 603,007 + -0.1 603,007 + +0.6 603,007 + -2.7 603,007 + +1.7 603,007 + +1.2 603,007 + -0.2 603,007 + -2.4 603,007 + -1.3 603,007 + +1.7 603,007 + +1.5 603,007 + -0.5 603,025 + -0.2 603,026 - -3.1 603,164 + Psest_0549 0.36 -3.0 603,316 + Psest_0549 0.66 -1.7 603,316 + Psest_0549 0.66 +0.9 603,316 + Psest_0549 0.66 -0.2 603,316 + Psest_0549 0.66 +3.0 603,418 + Psest_0549 0.87 -0.7 603,418 + Psest_0549 0.87 -0.5 603,418 + Psest_0549 0.87 -1.0 603,418 + Psest_0549 0.87 -1.6 603,418 + Psest_0549 0.87 +0.6 603,419 - Psest_0549 0.87 +0.1 603,419 - Psest_0549 0.87 -0.1 603,453 - -0.7 603,481 + -0.4 603,482 - -1.8 603,482 - +1.7 603,482 - +1.2 603,544 + -1.7 603,757 + +3.6 603,758 - -2.5 603,774 - +1.6 603,866 - Psest_0550 0.15 -1.3 603,866 - Psest_0550 0.15 +2.2 603,866 - Psest_0550 0.15 -0.0 604,222 + Psest_0550 0.56 +1.3 604,222 + Psest_0550 0.56 -0.7 604,222 + Psest_0550 0.56 +0.4 604,223 - Psest_0550 0.56 +1.1 604,266 + Psest_0550 0.61 +1.8 604,276 + Psest_0550 0.62 +1.0 604,276 + Psest_0550 0.62 -0.2 604,276 + Psest_0550 0.62 -1.4 604,276 + Psest_0550 0.62 -1.0 604,276 + Psest_0550 0.62 -2.3 604,276 + Psest_0550 0.62 +0.1 604,276 + Psest_0550 0.62 -1.0 604,277 - Psest_0550 0.62 -1.6 604,277 - Psest_0550 0.62 +0.1 604,277 - Psest_0550 0.62 -0.8 604,277 - Psest_0550 0.62 -0.9 604,277 - Psest_0550 0.62 -1.1 604,277 - Psest_0550 0.62 +1.5 604,277 - Psest_0550 0.62 -0.3 604,277 - Psest_0550 0.62 -0.4 604,456 + Psest_0550 0.83 -1.7
Or see this region's nucleotide sequence