Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0085

Experiment: a-Ketoglutaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0084 and Psest_0085 are separated by 134 nucleotidesPsest_0085 and Psest_0086 are separated by 354 nucleotidesPsest_0086 and Psest_0087 are separated by 71 nucleotides Psest_0084: Psest_0084 - alpha-ketoglutarate TRAP transporter, 4TM/12TM components (from data), at 85,079 to 87,103 _0084 Psest_0085: Psest_0085 - alpha-ketoglutarate TRAP transporter, solute receptor component (from data), at 87,238 to 88,191 _0085 Psest_0086: Psest_0086 - hypothetical protein, at 88,546 to 88,971 _0086 Psest_0087: Psest_0087 - hypothetical protein, at 89,043 to 89,285 _0087 Position (kb) 87 88 89Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.580 kb on + strand, within Psest_0084at 86.580 kb on + strand, within Psest_0084at 86.581 kb on - strand, within Psest_0084at 86.581 kb on - strand, within Psest_0084at 86.581 kb on - strand, within Psest_0084at 86.581 kb on - strand, within Psest_0084at 86.595 kb on + strand, within Psest_0084at 86.618 kb on + strand, within Psest_0084at 86.643 kb on + strand, within Psest_0084at 86.643 kb on + strand, within Psest_0084at 86.643 kb on + strand, within Psest_0084at 86.644 kb on - strand, within Psest_0084at 86.644 kb on - strand, within Psest_0084at 86.644 kb on - strand, within Psest_0084at 86.644 kb on - strand, within Psest_0084at 86.646 kb on + strand, within Psest_0084at 86.646 kb on + strand, within Psest_0084at 86.676 kb on + strand, within Psest_0084at 86.677 kb on - strand, within Psest_0084at 86.841 kb on + strandat 86.841 kb on + strand, within Psest_0084at 86.841 kb on + strand, within Psest_0084at 86.841 kb on + strand, within Psest_0084at 86.841 kb on + strand, within Psest_0084at 86.842 kb on - strand, within Psest_0084at 86.842 kb on - strand, within Psest_0084at 86.842 kb on - strand, within Psest_0084at 87.021 kb on + strandat 87.022 kb on - strandat 87.045 kb on + strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.137 kb on + strandat 87.137 kb on + strandat 87.137 kb on + strandat 87.137 kb on + strandat 87.137 kb on + strandat 87.138 kb on - strandat 87.181 kb on + strandat 87.181 kb on + strandat 87.182 kb on - strandat 87.239 kb on + strandat 87.239 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.264 kb on - strandat 87.264 kb on - strandat 87.396 kb on - strand, within Psest_0085at 87.479 kb on + strand, within Psest_0085at 87.479 kb on + strand, within Psest_0085at 87.479 kb on + strand, within Psest_0085at 87.480 kb on - strand, within Psest_0085at 87.480 kb on - strand, within Psest_0085at 87.480 kb on - strand, within Psest_0085at 87.510 kb on - strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.702 kb on - strand, within Psest_0085at 87.702 kb on - strand, within Psest_0085at 87.702 kb on - strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.988 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.041 kb on - strand, within Psest_0085at 88.041 kb on - strand, within Psest_0085at 88.073 kb on + strand, within Psest_0085at 88.073 kb on + strand, within Psest_0085at 88.074 kb on - strand, within Psest_0085at 88.074 kb on - strand, within Psest_0085at 88.074 kb on - strand, within Psest_0085at 88.240 kb on - strandat 88.368 kb on + strandat 88.368 kb on + strandat 88.402 kb on - strandat 88.452 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.486 kb on + strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.487 kb on - strandat 88.488 kb on + strandat 88.489 kb on - strandat 88.489 kb on - strandat 88.673 kb on - strand, within Psest_0086at 88.769 kb on - strand, within Psest_0086at 88.769 kb on - strand, within Psest_0086at 88.769 kb on - strand, within Psest_0086at 89.112 kb on + strand, within Psest_0087at 89.112 kb on + strand, within Psest_0087at 89.112 kb on + strand, within Psest_0087at 89.113 kb on - strand, within Psest_0087at 89.113 kb on - strand, within Psest_0087

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
remove
86,565 + Psest_0084 0.73 -3.3
86,565 + Psest_0084 0.73 -3.3
86,565 + Psest_0084 0.73 -4.3
86,565 + Psest_0084 0.73 -3.4
86,565 + Psest_0084 0.73 -3.3
86,565 + Psest_0084 0.73 -3.8
86,565 + Psest_0084 0.73 -3.3
86,565 + Psest_0084 0.73 -3.8
86,565 + Psest_0084 0.73 -3.5
86,565 + Psest_0084 0.73 -1.7
86,565 + Psest_0084 0.73 -1.7
86,565 + Psest_0084 0.73 -3.8
86,566 - Psest_0084 0.73 -2.4
86,566 - Psest_0084 0.73 -1.5
86,566 - Psest_0084 0.73 -1.7
86,566 - Psest_0084 0.73 -4.8
86,566 - Psest_0084 0.73 -4.1
86,566 - Psest_0084 0.73 -0.7
86,566 - Psest_0084 0.73 -2.9
86,566 - Psest_0084 0.73 -3.1
86,566 - Psest_0084 0.73 -3.3
86,566 - Psest_0084 0.73 -2.1
86,566 - Psest_0084 0.73 -3.1
86,566 - Psest_0084 0.73 -3.8
86,566 - Psest_0084 0.73 -1.2
86,566 - Psest_0084 0.73 -0.6
86,566 - Psest_0084 0.73 -3.7
86,566 - Psest_0084 0.73 -4.3
86,580 + Psest_0084 0.74 -3.1
86,580 + Psest_0084 0.74 -1.6
86,581 - Psest_0084 0.74 +0.1
86,581 - Psest_0084 0.74 -1.3
86,581 - Psest_0084 0.74 -2.7
86,581 - Psest_0084 0.74 -3.6
86,595 + Psest_0084 0.75 -4.2
86,618 + Psest_0084 0.76 -5.4
86,643 + Psest_0084 0.77 -4.1
86,643 + Psest_0084 0.77 -2.7
86,643 + Psest_0084 0.77 -3.6
86,644 - Psest_0084 0.77 -3.3
86,644 - Psest_0084 0.77 -3.2
86,644 - Psest_0084 0.77 -2.9
86,644 - Psest_0084 0.77 -4.1
86,646 + Psest_0084 0.77 +2.4
86,646 + Psest_0084 0.77 -3.3
86,676 + Psest_0084 0.79 -1.8
86,677 - Psest_0084 0.79 -4.1
86,841 + -2.1
86,841 + Psest_0084 0.87 -4.2
86,841 + Psest_0084 0.87 -4.3
86,841 + Psest_0084 0.87 -4.2
86,841 + Psest_0084 0.87 -4.0
86,842 - Psest_0084 0.87 -3.5
86,842 - Psest_0084 0.87 -3.3
86,842 - Psest_0084 0.87 -3.7
87,021 + -3.2
87,022 - -1.9
87,045 + -2.3
87,046 - -0.5
87,046 - -3.1
87,046 - -2.5
87,046 - -3.7
87,046 - -1.9
87,046 - -4.1
87,046 - -3.0
87,046 - -3.7
87,046 - -2.2
87,137 + -2.6
87,137 + -2.9
87,137 + -2.3
87,137 + -1.0
87,137 + -2.7
87,138 - -2.9
87,181 + -3.4
87,181 + -3.3
87,182 - -4.2
87,239 + -1.7
87,239 + -3.8
87,263 + -0.9
87,263 + -3.1
87,263 + -3.7
87,263 + -2.7
87,263 + -5.4
87,263 + -2.8
87,263 + -4.5
87,263 + -4.6
87,264 - -4.8
87,264 - -2.3
87,396 - Psest_0085 0.17 -3.2
87,479 + Psest_0085 0.25 -2.1
87,479 + Psest_0085 0.25 -3.8
87,479 + Psest_0085 0.25 -3.5
87,480 - Psest_0085 0.25 -2.5
87,480 - Psest_0085 0.25 -3.6
87,480 - Psest_0085 0.25 -5.0
87,510 - Psest_0085 0.29 -2.5
87,668 + Psest_0085 0.45 -4.9
87,668 + Psest_0085 0.45 -4.8
87,668 + Psest_0085 0.45 -4.5
87,668 + Psest_0085 0.45 -3.9
87,701 + Psest_0085 0.49 -3.3
87,701 + Psest_0085 0.49 -3.3
87,701 + Psest_0085 0.49 -4.3
87,701 + Psest_0085 0.49 -3.9
87,702 - Psest_0085 0.49 -3.5
87,702 - Psest_0085 0.49 -4.6
87,702 - Psest_0085 0.49 -3.8
87,839 + Psest_0085 0.63 -4.7
87,839 + Psest_0085 0.63 -2.8
87,839 + Psest_0085 0.63 -3.9
87,839 + Psest_0085 0.63 -3.9
87,839 + Psest_0085 0.63 -3.6
87,839 + Psest_0085 0.63 -2.5
87,839 + Psest_0085 0.63 -3.4
87,840 - Psest_0085 0.63 -3.0
87,840 - Psest_0085 0.63 -4.8
87,840 - Psest_0085 0.63 -0.9
87,840 - Psest_0085 0.63 -2.7
87,840 - Psest_0085 0.63 -5.2
87,840 - Psest_0085 0.63 -3.5
87,848 + Psest_0085 0.64 -2.7
87,848 + Psest_0085 0.64 -4.0
87,848 + Psest_0085 0.64 -4.3
87,848 + Psest_0085 0.64 -2.7
87,848 + Psest_0085 0.64 -1.2
87,848 + Psest_0085 0.64 -2.9
87,849 - Psest_0085 0.64 -5.1
87,849 - Psest_0085 0.64 -4.7
87,849 - Psest_0085 0.64 -1.8
87,849 - Psest_0085 0.64 -0.8
87,849 - Psest_0085 0.64 -2.1
87,849 - Psest_0085 0.64 -2.4
87,849 - Psest_0085 0.64 -2.5
87,849 - Psest_0085 0.64 -4.5
87,849 - Psest_0085 0.64 -3.6
87,988 + Psest_0085 0.79 -4.0
88,040 + Psest_0085 0.84 -5.6
88,040 + Psest_0085 0.84 -4.8
88,040 + Psest_0085 0.84 -4.1
88,040 + Psest_0085 0.84 -4.3
88,040 + Psest_0085 0.84 -2.9
88,040 + Psest_0085 0.84 -2.5
88,041 - Psest_0085 0.84 -4.5
88,041 - Psest_0085 0.84 -3.3
88,073 + Psest_0085 0.88 -3.3
88,073 + Psest_0085 0.88 -3.6
88,074 - Psest_0085 0.88 -1.3
88,074 - Psest_0085 0.88 -5.8
88,074 - Psest_0085 0.88 -4.8
88,240 - +1.9
88,368 + -1.5
88,368 + -2.6
88,402 - -1.6
88,452 + -2.8
88,486 + -0.4
88,486 + -0.3
88,486 + -0.5
88,486 + -0.0
88,486 + -0.5
88,486 + +1.2
88,487 - -0.2
88,487 - -0.8
88,487 - -0.1
88,487 - -0.0
88,487 - -1.2
88,487 - -1.4
88,488 + -1.2
88,489 - -1.1
88,489 - +0.1
88,673 - Psest_0086 0.30 -0.7
88,769 - Psest_0086 0.52 -1.1
88,769 - Psest_0086 0.52 +0.3
88,769 - Psest_0086 0.52 -0.2
89,112 + Psest_0087 0.28 +1.2
89,112 + Psest_0087 0.28 +0.4
89,112 + Psest_0087 0.28 +1.0
89,113 - Psest_0087 0.29 -0.8
89,113 - Psest_0087 0.29 +0.2

Or see this region's nucleotide sequence