Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0084

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0083 and Psest_0084 overlap by 4 nucleotidesPsest_0084 and Psest_0085 are separated by 134 nucleotides Psest_0083: Psest_0083 - Uncharacterized conserved protein, at 84,675 to 85,082 _0083 Psest_0084: Psest_0084 - alpha-ketoglutarate TRAP transporter, 4TM/12TM components (from data), at 85,079 to 87,103 _0084 Psest_0085: Psest_0085 - alpha-ketoglutarate TRAP transporter, solute receptor component (from data), at 87,238 to 88,191 _0085 Position (kb) 85 86 87 88Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 84.120 kb on + strandat 84.120 kb on + strandat 84.121 kb on - strandat 84.121 kb on - strandat 84.121 kb on - strandat 84.121 kb on - strandat 84.121 kb on - strandat 84.121 kb on - strandat 84.221 kb on + strandat 84.222 kb on - strandat 84.499 kb on - strandat 84.591 kb on - strandat 84.591 kb on - strandat 84.591 kb on - strandat 84.605 kb on - strandat 84.707 kb on + strandat 84.707 kb on + strandat 84.707 kb on + strandat 84.800 kb on - strand, within Psest_0083at 84.800 kb on - strand, within Psest_0083at 84.863 kb on - strand, within Psest_0083at 84.971 kb on - strand, within Psest_0083at 85.241 kb on + strandat 85.241 kb on + strandat 85.241 kb on + strandat 85.241 kb on + strandat 85.241 kb on + strandat 85.242 kb on - strandat 85.242 kb on - strandat 85.242 kb on - strandat 85.242 kb on - strandat 85.242 kb on - strandat 85.242 kb on - strandat 85.242 kb on - strandat 85.242 kb on - strandat 85.302 kb on + strand, within Psest_0084at 85.302 kb on + strand, within Psest_0084at 85.302 kb on + strand, within Psest_0084at 85.302 kb on + strand, within Psest_0084at 85.302 kb on + strand, within Psest_0084at 85.302 kb on + strand, within Psest_0084at 85.302 kb on + strand, within Psest_0084at 85.303 kb on - strand, within Psest_0084at 85.303 kb on - strand, within Psest_0084at 85.303 kb on - strand, within Psest_0084at 85.303 kb on - strand, within Psest_0084at 85.303 kb on - strand, within Psest_0084at 85.303 kb on - strand, within Psest_0084at 85.303 kb on - strand, within Psest_0084at 85.303 kb on - strand, within Psest_0084at 85.350 kb on + strand, within Psest_0084at 85.350 kb on + strand, within Psest_0084at 85.350 kb on + strand, within Psest_0084at 85.350 kb on + strand, within Psest_0084at 85.350 kb on + strand, within Psest_0084at 85.351 kb on - strand, within Psest_0084at 85.351 kb on - strand, within Psest_0084at 85.351 kb on - strand, within Psest_0084at 85.351 kb on - strand, within Psest_0084at 85.497 kb on + strand, within Psest_0084at 85.497 kb on + strand, within Psest_0084at 85.497 kb on + strand, within Psest_0084at 85.497 kb on + strand, within Psest_0084at 85.497 kb on + strand, within Psest_0084at 85.498 kb on - strand, within Psest_0084at 85.498 kb on - strand, within Psest_0084at 85.578 kb on + strand, within Psest_0084at 85.578 kb on + strand, within Psest_0084at 85.578 kb on + strand, within Psest_0084at 85.578 kb on + strand, within Psest_0084at 85.578 kb on + strand, within Psest_0084at 85.578 kb on + strand, within Psest_0084at 85.578 kb on + strand, within Psest_0084at 85.578 kb on + strand, within Psest_0084at 85.578 kb on + strand, within Psest_0084at 85.579 kb on - strand, within Psest_0084at 85.678 kb on - strand, within Psest_0084at 85.844 kb on + strand, within Psest_0084at 85.845 kb on - strand, within Psest_0084at 86.190 kb on + strand, within Psest_0084at 86.190 kb on + strand, within Psest_0084at 86.190 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.565 kb on + strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.566 kb on - strand, within Psest_0084at 86.580 kb on + strand, within Psest_0084at 86.580 kb on + strand, within Psest_0084at 86.581 kb on - strand, within Psest_0084at 86.581 kb on - strand, within Psest_0084at 86.581 kb on - strand, within Psest_0084at 86.581 kb on - strand, within Psest_0084at 86.595 kb on + strand, within Psest_0084at 86.618 kb on + strand, within Psest_0084at 86.643 kb on + strand, within Psest_0084at 86.643 kb on + strand, within Psest_0084at 86.643 kb on + strand, within Psest_0084at 86.644 kb on - strand, within Psest_0084at 86.644 kb on - strand, within Psest_0084at 86.644 kb on - strand, within Psest_0084at 86.644 kb on - strand, within Psest_0084at 86.646 kb on + strand, within Psest_0084at 86.646 kb on + strand, within Psest_0084at 86.676 kb on + strand, within Psest_0084at 86.677 kb on - strand, within Psest_0084at 86.841 kb on + strandat 86.841 kb on + strand, within Psest_0084at 86.841 kb on + strand, within Psest_0084at 86.841 kb on + strand, within Psest_0084at 86.841 kb on + strand, within Psest_0084at 86.842 kb on - strand, within Psest_0084at 86.842 kb on - strand, within Psest_0084at 86.842 kb on - strand, within Psest_0084at 87.021 kb on + strandat 87.022 kb on - strandat 87.045 kb on + strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.046 kb on - strandat 87.137 kb on + strandat 87.137 kb on + strandat 87.137 kb on + strandat 87.137 kb on + strandat 87.137 kb on + strandat 87.138 kb on - strandat 87.181 kb on + strandat 87.181 kb on + strandat 87.182 kb on - strandat 87.239 kb on + strandat 87.239 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.263 kb on + strandat 87.264 kb on - strandat 87.264 kb on - strandat 87.396 kb on - strand, within Psest_0085at 87.479 kb on + strand, within Psest_0085at 87.479 kb on + strand, within Psest_0085at 87.479 kb on + strand, within Psest_0085at 87.480 kb on - strand, within Psest_0085at 87.480 kb on - strand, within Psest_0085at 87.480 kb on - strand, within Psest_0085at 87.510 kb on - strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.668 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.701 kb on + strand, within Psest_0085at 87.702 kb on - strand, within Psest_0085at 87.702 kb on - strand, within Psest_0085at 87.702 kb on - strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.839 kb on + strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.840 kb on - strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.848 kb on + strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.849 kb on - strand, within Psest_0085at 87.988 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.040 kb on + strand, within Psest_0085at 88.041 kb on - strand, within Psest_0085at 88.041 kb on - strand, within Psest_0085at 88.073 kb on + strand, within Psest_0085at 88.073 kb on + strand, within Psest_0085at 88.074 kb on - strand, within Psest_0085at 88.074 kb on - strand, within Psest_0085at 88.074 kb on - strand, within Psest_0085

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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84,120 + +0.1
84,120 + +0.9
84,121 - -0.1
84,121 - -1.0
84,121 - -0.9
84,121 - +0.5
84,121 - +0.1
84,121 - +0.2
84,221 + -0.5
84,222 - -0.1
84,499 - -0.1
84,591 - -0.2
84,591 - +0.7
84,591 - +0.9
84,605 - +1.1
84,707 + +0.2
84,707 + -2.0
84,707 + -0.5
84,800 - Psest_0083 0.31 +0.4
84,800 - Psest_0083 0.31 -0.1
84,863 - Psest_0083 0.46 -0.4
84,971 - Psest_0083 0.73 -0.7
85,241 + -4.5
85,241 + -3.1
85,241 + -4.5
85,241 + -1.8
85,241 + -4.3
85,242 - -2.6
85,242 - -4.0
85,242 - -2.9
85,242 - -3.7
85,242 - -1.7
85,242 - -3.1
85,242 - -4.6
85,242 - -2.7
85,302 + Psest_0084 0.11 -3.2
85,302 + Psest_0084 0.11 -4.2
85,302 + Psest_0084 0.11 -2.3
85,302 + Psest_0084 0.11 -2.7
85,302 + Psest_0084 0.11 -2.8
85,302 + Psest_0084 0.11 -3.8
85,302 + Psest_0084 0.11 -1.8
85,303 - Psest_0084 0.11 -4.3
85,303 - Psest_0084 0.11 -3.1
85,303 - Psest_0084 0.11 -1.9
85,303 - Psest_0084 0.11 -1.5
85,303 - Psest_0084 0.11 -2.8
85,303 - Psest_0084 0.11 -2.5
85,303 - Psest_0084 0.11 -2.7
85,303 - Psest_0084 0.11 -4.8
85,350 + Psest_0084 0.13 -3.9
85,350 + Psest_0084 0.13 -3.6
85,350 + Psest_0084 0.13 -2.2
85,350 + Psest_0084 0.13 -3.3
85,350 + Psest_0084 0.13 -2.5
85,351 - Psest_0084 0.13 -1.9
85,351 - Psest_0084 0.13 -4.6
85,351 - Psest_0084 0.13 -1.9
85,351 - Psest_0084 0.13 -3.2
85,497 + Psest_0084 0.21 -4.6
85,497 + Psest_0084 0.21 -3.1
85,497 + Psest_0084 0.21 -2.6
85,497 + Psest_0084 0.21 -6.0
85,497 + Psest_0084 0.21 -3.3
85,498 - Psest_0084 0.21 -3.2
85,498 - Psest_0084 0.21 -1.8
85,578 + Psest_0084 0.25 -4.0
85,578 + Psest_0084 0.25 -1.9
85,578 + Psest_0084 0.25 -3.7
85,578 + Psest_0084 0.25 -4.8
85,578 + Psest_0084 0.25 -3.2
85,578 + Psest_0084 0.25 -4.3
85,578 + Psest_0084 0.25 -3.5
85,578 + Psest_0084 0.25 -1.7
85,578 + Psest_0084 0.25 -3.9
85,579 - Psest_0084 0.25 -2.3
85,678 - Psest_0084 0.30 -3.9
85,844 + Psest_0084 0.38 -4.3
85,845 - Psest_0084 0.38 -2.1
86,190 + Psest_0084 0.55 -2.2
86,190 + Psest_0084 0.55 -5.5
86,190 + Psest_0084 0.55 -2.9
86,565 + Psest_0084 0.73 -3.3
86,565 + Psest_0084 0.73 -3.3
86,565 + Psest_0084 0.73 -4.3
86,565 + Psest_0084 0.73 -3.4
86,565 + Psest_0084 0.73 -3.3
86,565 + Psest_0084 0.73 -3.8
86,565 + Psest_0084 0.73 -3.3
86,565 + Psest_0084 0.73 -3.8
86,565 + Psest_0084 0.73 -3.5
86,565 + Psest_0084 0.73 -1.7
86,565 + Psest_0084 0.73 -1.7
86,565 + Psest_0084 0.73 -3.8
86,566 - Psest_0084 0.73 -2.4
86,566 - Psest_0084 0.73 -1.5
86,566 - Psest_0084 0.73 -1.7
86,566 - Psest_0084 0.73 -4.8
86,566 - Psest_0084 0.73 -4.1
86,566 - Psest_0084 0.73 -0.7
86,566 - Psest_0084 0.73 -2.9
86,566 - Psest_0084 0.73 -3.1
86,566 - Psest_0084 0.73 -3.3
86,566 - Psest_0084 0.73 -2.1
86,566 - Psest_0084 0.73 -3.1
86,566 - Psest_0084 0.73 -3.8
86,566 - Psest_0084 0.73 -1.2
86,566 - Psest_0084 0.73 -0.6
86,566 - Psest_0084 0.73 -3.7
86,566 - Psest_0084 0.73 -4.3
86,580 + Psest_0084 0.74 -3.1
86,580 + Psest_0084 0.74 -1.6
86,581 - Psest_0084 0.74 +0.1
86,581 - Psest_0084 0.74 -1.3
86,581 - Psest_0084 0.74 -2.7
86,581 - Psest_0084 0.74 -3.6
86,595 + Psest_0084 0.75 -4.2
86,618 + Psest_0084 0.76 -5.4
86,643 + Psest_0084 0.77 -4.1
86,643 + Psest_0084 0.77 -2.7
86,643 + Psest_0084 0.77 -3.6
86,644 - Psest_0084 0.77 -3.3
86,644 - Psest_0084 0.77 -3.2
86,644 - Psest_0084 0.77 -2.9
86,644 - Psest_0084 0.77 -4.1
86,646 + Psest_0084 0.77 +2.4
86,646 + Psest_0084 0.77 -3.3
86,676 + Psest_0084 0.79 -1.8
86,677 - Psest_0084 0.79 -4.1
86,841 + -2.1
86,841 + Psest_0084 0.87 -4.2
86,841 + Psest_0084 0.87 -4.3
86,841 + Psest_0084 0.87 -4.2
86,841 + Psest_0084 0.87 -4.0
86,842 - Psest_0084 0.87 -3.5
86,842 - Psest_0084 0.87 -3.3
86,842 - Psest_0084 0.87 -3.7
87,021 + -3.2
87,022 - -1.9
87,045 + -2.3
87,046 - -0.5
87,046 - -3.1
87,046 - -2.5
87,046 - -3.7
87,046 - -1.9
87,046 - -4.1
87,046 - -3.0
87,046 - -3.7
87,046 - -2.2
87,137 + -2.6
87,137 + -2.9
87,137 + -2.3
87,137 + -1.0
87,137 + -2.7
87,138 - -2.9
87,181 + -3.4
87,181 + -3.3
87,182 - -4.2
87,239 + -1.7
87,239 + -3.8
87,263 + -0.9
87,263 + -3.1
87,263 + -3.7
87,263 + -2.7
87,263 + -5.4
87,263 + -2.8
87,263 + -4.5
87,263 + -4.6
87,264 - -4.8
87,264 - -2.3
87,396 - Psest_0085 0.17 -3.2
87,479 + Psest_0085 0.25 -2.1
87,479 + Psest_0085 0.25 -3.8
87,479 + Psest_0085 0.25 -3.5
87,480 - Psest_0085 0.25 -2.5
87,480 - Psest_0085 0.25 -3.6
87,480 - Psest_0085 0.25 -5.0
87,510 - Psest_0085 0.29 -2.5
87,668 + Psest_0085 0.45 -4.9
87,668 + Psest_0085 0.45 -4.8
87,668 + Psest_0085 0.45 -4.5
87,668 + Psest_0085 0.45 -3.9
87,701 + Psest_0085 0.49 -3.3
87,701 + Psest_0085 0.49 -3.3
87,701 + Psest_0085 0.49 -4.3
87,701 + Psest_0085 0.49 -3.9
87,702 - Psest_0085 0.49 -3.5
87,702 - Psest_0085 0.49 -4.6
87,702 - Psest_0085 0.49 -3.8
87,839 + Psest_0085 0.63 -4.7
87,839 + Psest_0085 0.63 -2.8
87,839 + Psest_0085 0.63 -3.9
87,839 + Psest_0085 0.63 -3.9
87,839 + Psest_0085 0.63 -3.6
87,839 + Psest_0085 0.63 -2.5
87,839 + Psest_0085 0.63 -3.4
87,840 - Psest_0085 0.63 -3.0
87,840 - Psest_0085 0.63 -4.8
87,840 - Psest_0085 0.63 -0.9
87,840 - Psest_0085 0.63 -2.7
87,840 - Psest_0085 0.63 -5.2
87,840 - Psest_0085 0.63 -3.5
87,848 + Psest_0085 0.64 -2.7
87,848 + Psest_0085 0.64 -4.0
87,848 + Psest_0085 0.64 -4.3
87,848 + Psest_0085 0.64 -2.7
87,848 + Psest_0085 0.64 -1.2
87,848 + Psest_0085 0.64 -2.9
87,849 - Psest_0085 0.64 -5.1
87,849 - Psest_0085 0.64 -4.7
87,849 - Psest_0085 0.64 -1.8
87,849 - Psest_0085 0.64 -0.8
87,849 - Psest_0085 0.64 -2.1
87,849 - Psest_0085 0.64 -2.4
87,849 - Psest_0085 0.64 -2.5
87,849 - Psest_0085 0.64 -4.5
87,849 - Psest_0085 0.64 -3.6
87,988 + Psest_0085 0.79 -4.0
88,040 + Psest_0085 0.84 -5.6
88,040 + Psest_0085 0.84 -4.8
88,040 + Psest_0085 0.84 -4.1
88,040 + Psest_0085 0.84 -4.3
88,040 + Psest_0085 0.84 -2.9
88,040 + Psest_0085 0.84 -2.5
88,041 - Psest_0085 0.84 -4.5
88,041 - Psest_0085 0.84 -3.3
88,073 + Psest_0085 0.88 -3.3
88,073 + Psest_0085 0.88 -3.6
88,074 - Psest_0085 0.88 -1.3
88,074 - Psest_0085 0.88 -5.8
88,074 - Psest_0085 0.88 -4.8

Or see this region's nucleotide sequence