Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3101

Experiment: a-Ketoglutaric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric (C)
3,278,467	-				+2.0
3,278,467	-				+1.9
3,278,467	-				-0.1
3,278,467	-				-0.5
3,278,467	-				+1.5
3,278,471	-				-1.5
3,278,471	-				-0.1
3,278,471	-				-0.5
3,278,551	-		Psest_3100	0.20	+0.8
3,278,551	-		Psest_3100	0.20	+0.7
3,278,551	-		Psest_3100	0.20	+1.5
3,278,551	-		Psest_3100	0.20	+0.5
3,278,551	-		Psest_3100	0.20	+1.5
3,278,576	-		Psest_3100	0.24	-0.1
3,278,576	-		Psest_3100	0.24	-0.1
3,278,584	-		Psest_3100	0.26	+0.5
3,278,697	-		Psest_3100	0.45	+0.0
3,278,697	-		Psest_3100	0.45	-0.7
3,278,773	-		Psest_3100	0.58	-1.7
3,278,800	-		Psest_3100	0.63	+0.9
3,278,800	-		Psest_3100	0.63	+1.5
3,278,802	-		Psest_3100	0.63	+0.7
3,278,802	-		Psest_3100	0.63	+0.2
3,278,841	-		Psest_3100	0.70	+1.5
3,278,849	-		Psest_3100	0.71	-0.5
3,278,849	-		Psest_3100	0.71	+0.1
3,278,849	-		Psest_3100	0.71	-0.5
3,278,931	-		Psest_3100	0.85	+1.5
3,279,077	-				-0.5
3,279,112	-				+1.7
3,279,130	-				-0.2
3,279,242	-				-3.7
3,279,297	-				+0.9
3,279,297	-				-1.2
3,279,309	-				+0.1
3,279,330	+				-1.5
3,279,331	-				+0.9
3,279,331	-				-0.7
3,279,332	+				+0.1
3,279,332	+				-1.2
3,279,333	-				-0.8
3,279,333	-				-0.5
3,279,333	-				-0.5
3,279,333	-				-1.3
3,279,333	-				+0.9
3,279,333	-				+2.0
3,279,333	-				+0.1
3,279,333	-				-0.4
3,279,333	-				+1.1
3,279,334	+				-1.3
3,279,335	-				-0.5
3,279,335	-				-1.3
3,279,335	-				-1.1
3,279,335	-				-0.2
3,279,335	-				+1.5
3,279,335	-				-0.3
3,279,335	-				+1.2
3,279,335	-				-0.4
3,279,335	-				+0.3
3,279,335	-				+0.7
3,279,335	-				-0.4
3,279,335	-				-1.0
3,279,335	-				-1.3
3,279,335	-				-3.1
3,279,335	-				-2.1
3,279,335	-				+0.6
3,279,335	-				-0.8
3,279,335	-				-0.3
3,279,335	-				+0.3
3,279,335	-				-1.4
3,279,335	-				-0.9
3,279,338	-				-0.6
3,279,338	-				-0.6
3,279,338	-				-1.2
3,279,378	+				-3.1
3,279,378	+				-0.4
3,279,379	-				+0.0
3,279,379	-				-1.0
3,279,379	-				-1.1
3,279,379	-				-0.6
3,279,390	+				-1.7
3,279,390	+				-1.5
3,279,390	+				+0.5
3,279,391	-				-0.9
3,279,498	-				+0.2
3,279,740	-		Psest_3101	0.23	-0.2
3,279,911	+		Psest_3101	0.34	-1.9
3,279,911	+		Psest_3101	0.34	-1.1
3,279,912	-		Psest_3101	0.34	-1.1
3,279,912	-		Psest_3101	0.34	-0.6
3,279,912	-		Psest_3101	0.34	-0.7
3,279,912	-		Psest_3101	0.34	-1.0
3,279,912	-		Psest_3101	0.34	-0.5
3,279,912	-		Psest_3101	0.34	-0.3
3,279,912	-		Psest_3101	0.34	+0.0
3,279,912	-		Psest_3101	0.34	-0.6
3,279,912	-		Psest_3101	0.34	-0.5
3,279,912	-		Psest_3101	0.34	-0.4
3,279,912	-		Psest_3101	0.34	-0.4
3,279,912	-		Psest_3101	0.34	-1.2
3,279,996	-		Psest_3101	0.39	-0.3
3,279,996	-		Psest_3101	0.39	-2.5
3,279,996	-		Psest_3101	0.39	+1.2
3,280,110	-		Psest_3101	0.46	-0.5
3,280,292	+		Psest_3101	0.57	-0.5
3,280,350	-		Psest_3101	0.61	-0.5
3,280,350	-		Psest_3101	0.61	-0.1
3,280,368	-		Psest_3101	0.62	-1.7
3,280,368	-		Psest_3101	0.62	-0.9
3,280,418	+		Psest_3101	0.65	-2.0
3,280,419	-		Psest_3101	0.65	-1.3
3,280,419	-		Psest_3101	0.65	-0.5
3,280,419	-		Psest_3101	0.65	-1.1
3,280,419	-		Psest_3101	0.65	-0.9
3,280,475	+		Psest_3101	0.69	-0.1
3,280,476	-		Psest_3101	0.69	-1.2
3,280,476	-		Psest_3101	0.69	-0.5
3,280,604	-		Psest_3101	0.77	-1.2
3,280,713	-		Psest_3101	0.83	+0.2
3,280,713	-		Psest_3101	0.83	-0.2
3,280,713	-		Psest_3101	0.83	-0.7
3,280,713	-		Psest_3101	0.83	-0.1
3,280,713	-		Psest_3101	0.83	-1.2
3,280,713	-		Psest_3101	0.83	-1.1
3,280,713	-		Psest_3101	0.83	-1.5
3,280,797	-		Psest_3101	0.89	+0.0
3,280,797	-		Psest_3101	0.89	-0.9
3,280,797	-		Psest_3101	0.89	-0.7
3,280,805	+		Psest_3101	0.89	-1.0
3,280,805	+		Psest_3101	0.89	-0.6
3,280,806	-		Psest_3101	0.89	-1.3
3,280,806	-		Psest_3101	0.89	+0.5
3,280,806	-		Psest_3101	0.89	-0.9
3,280,806	-		Psest_3101	0.89	-0.4
3,280,806	-		Psest_3101	0.89	-0.8
3,280,806	-		Psest_3101	0.89	-1.3
3,280,806	-		Psest_3101	0.89	-1.2
3,280,806	-		Psest_3101	0.89	-1.1
3,280,806	-		Psest_3101	0.89	-0.9
3,280,806	-		Psest_3101	0.89	-1.1
3,280,806	-		Psest_3101	0.89	-0.6
3,280,806	-		Psest_3101	0.89	-1.3
3,280,806	-		Psest_3101	0.89	+0.3
3,280,908	-				-1.2
3,280,908	-				-1.0
3,280,952	-				-0.2
3,281,045	+		Psest_3102	0.21	+0.6
3,281,045	+		Psest_3102	0.21	-0.1
3,281,045	+		Psest_3102	0.21	-1.2
3,281,045	+		Psest_3102	0.21	+0.0
3,281,046	-		Psest_3102	0.21	+0.7
3,281,046	-		Psest_3102	0.21	-1.1
3,281,302	+		Psest_3102	0.77	+1.1
3,281,302	+		Psest_3102	0.77	-1.0
3,281,303	-		Psest_3102	0.77	+0.7
3,281,303	-		Psest_3102	0.77	+0.4
3,281,338	+		Psest_3102	0.85	+1.1
3,281,338	+		Psest_3102	0.85	-0.0
3,281,339	-		Psest_3102	0.85	-0.9
3,281,339	-		Psest_3102	0.85	-0.5
3,281,339	-		Psest_3102	0.85	+0.1
3,281,339	-		Psest_3102	0.85	+0.1
3,281,339	-		Psest_3102	0.85	-0.8
3,281,339	-		Psest_3102	0.85	+0.2
3,281,391	-				+2.4
3,281,644	-				+0.1
3,281,644	-				-0.9
3,281,644	-				-1.0
3,281,673	+				-1.2
3,281,673	+				-1.1
3,281,673	+				-1.8
3,281,673	+				-1.7
3,281,673	+				+0.7
3,281,673	+				-0.4
3,281,674	-				-0.7
3,281,674	-				-0.2
3,281,675	+				-1.8
3,281,675	+				-0.6
3,281,676	-				+1.1
3,281,676	-				+0.3
3,281,756	+				+1.2
3,281,756	+				+0.0
3,281,756	+				+1.8
3,281,756	+				+0.7
3,281,756	+				-0.2
3,281,757	-				-0.4
3,281,757	-				+0.4
3,281,757	-				-0.0
3,281,807	+				-0.8
3,281,807	+				-0.2
3,281,807	+				+1.7