Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0329

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0328 and Psest_0329 are separated by 107 nucleotidesPsest_0329 and Psest_0330 are separated by 46 nucleotides Psest_0328: Psest_0328 - transketolase, bacterial and yeast, at 350,894 to 352,891 _0328 Psest_0329: Psest_0329 - erythrose-4-phosphate dehydrogenase, at 352,999 to 354,045 _0329 Psest_0330: Psest_0330 - 3-phosphoglycerate kinase, at 354,092 to 355,252 _0330 Position (kb) 352 353 354 355Strain fitness (log2 ratio) -1 0 1at 354.043 kb on + strandat 354.044 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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354,043 + -1.0
354,044 - -0.2

Or see this region's nucleotide sequence