Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1019 and Psest_1020 are separated by 17 nucleotides Psest_1020 and Psest_1021 are separated by 78 nucleotides Psest_1021 and Psest_1022 are separated by 213 nucleotides
Psest_1019: Psest_1019 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 1,105,699 to 1,107,048
_1019
Psest_1020: Psest_1020 - acetyl-CoA carboxylase, biotin carboxyl carrier protein, at 1,107,066 to 1,107,521
_1020
Psest_1021: Psest_1021 - 3-dehydroquinate dehydratase, type II, at 1,107,600 to 1,108,043
_1021
Psest_1022: Psest_1022 - Thiol:disulfide interchange protein, at 1,108,257 to 1,110,068
_1022
Position (kb)
1107
1108
1109 Strain fitness (log2 ratio)
-2
-1
0
1 at 1108.172 kb on - strand at 1108.308 kb on + strand at 1108.321 kb on - strand at 1108.343 kb on + strand at 1108.391 kb on - strand at 1108.446 kb on + strand, within Psest_1022 at 1108.454 kb on - strand, within Psest_1022 at 1108.534 kb on + strand, within Psest_1022 at 1108.535 kb on - strand, within Psest_1022 at 1108.726 kb on + strand, within Psest_1022 at 1108.737 kb on + strand, within Psest_1022 at 1108.738 kb on - strand, within Psest_1022 at 1108.863 kb on + strand, within Psest_1022 at 1108.911 kb on + strand, within Psest_1022 at 1108.911 kb on + strand, within Psest_1022 at 1108.911 kb on + strand, within Psest_1022 at 1108.912 kb on - strand, within Psest_1022 at 1108.912 kb on - strand, within Psest_1022
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 1,108,172 - -0.2 1,108,308 + +0.0 1,108,321 - -0.5 1,108,343 + +0.3 1,108,391 - -2.6 1,108,446 + Psest_1022 0.10 +0.7 1,108,454 - Psest_1022 0.11 +0.1 1,108,534 + Psest_1022 0.15 -0.4 1,108,535 - Psest_1022 0.15 +0.4 1,108,726 + Psest_1022 0.26 +0.1 1,108,737 + Psest_1022 0.26 +0.4 1,108,738 - Psest_1022 0.27 +0.2 1,108,863 + Psest_1022 0.33 -1.8 1,108,911 + Psest_1022 0.36 -0.1 1,108,911 + Psest_1022 0.36 +1.5 1,108,911 + Psest_1022 0.36 +1.0 1,108,912 - Psest_1022 0.36 +0.6 1,108,912 - Psest_1022 0.36 +0.6
Or see this region's nucleotide sequence