Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1020

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1019 and Psest_1020 are separated by 17 nucleotidesPsest_1020 and Psest_1021 are separated by 78 nucleotidesPsest_1021 and Psest_1022 are separated by 213 nucleotides Psest_1019: Psest_1019 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 1,105,699 to 1,107,048 _1019 Psest_1020: Psest_1020 - acetyl-CoA carboxylase, biotin carboxyl carrier protein, at 1,107,066 to 1,107,521 _1020 Psest_1021: Psest_1021 - 3-dehydroquinate dehydratase, type II, at 1,107,600 to 1,108,043 _1021 Psest_1022: Psest_1022 - Thiol:disulfide interchange protein, at 1,108,257 to 1,110,068 _1022 Position (kb) 1107 1108Strain fitness (log2 ratio) -2 -1 0 1at 1108.172 kb on - strandat 1108.308 kb on + strandat 1108.321 kb on - strandat 1108.343 kb on + strandat 1108.391 kb on - strandat 1108.446 kb on + strand, within Psest_1022at 1108.454 kb on - strand, within Psest_1022

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
1,108,172 - -0.2
1,108,308 + +0.0
1,108,321 - -0.5
1,108,343 + +0.3
1,108,391 - -2.6
1,108,446 + Psest_1022 0.10 +0.7
1,108,454 - Psest_1022 0.11 +0.1

Or see this region's nucleotide sequence