Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1014 and Psest_1015 are separated by 76 nucleotides Psest_1015 and Psest_1016 overlap by 4 nucleotides
Psest_1014: Psest_1014 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 1,100,107 to 1,101,711
_1014
Psest_1015: Psest_1015 - Factor for inversion stimulation Fis, transcriptional activator, at 1,101,788 to 1,102,108
_1015
Psest_1016: Psest_1016 - putative TIM-barrel protein, nifR3 family, at 1,102,105 to 1,103,118
_1016
Position (kb)
1101
1102
1103 Strain fitness (log2 ratio)
-1
0
1 at 1101.204 kb on - strand, within Psest_1014 at 1102.083 kb on - strand at 1102.254 kb on - strand, within Psest_1016 at 1102.302 kb on - strand, within Psest_1016 at 1102.302 kb on - strand, within Psest_1016 at 1102.392 kb on - strand, within Psest_1016 at 1102.392 kb on - strand, within Psest_1016 at 1102.563 kb on - strand, within Psest_1016 at 1102.563 kb on - strand, within Psest_1016 at 1102.580 kb on + strand, within Psest_1016 at 1102.581 kb on - strand, within Psest_1016 at 1102.581 kb on - strand, within Psest_1016 at 1102.844 kb on - strand, within Psest_1016 at 1103.026 kb on + strand at 1103.027 kb on - strand at 1103.027 kb on - strand at 1103.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 1,101,204 - Psest_1014 0.68 -0.8 1,102,083 - +0.1 1,102,254 - Psest_1016 0.15 +0.4 1,102,302 - Psest_1016 0.19 -0.7 1,102,302 - Psest_1016 0.19 +0.3 1,102,392 - Psest_1016 0.28 -1.3 1,102,392 - Psest_1016 0.28 -1.7 1,102,563 - Psest_1016 0.45 -0.2 1,102,563 - Psest_1016 0.45 -0.2 1,102,580 + Psest_1016 0.47 -1.0 1,102,581 - Psest_1016 0.47 -1.0 1,102,581 - Psest_1016 0.47 -0.5 1,102,844 - Psest_1016 0.73 -0.9 1,103,026 + -1.0 1,103,027 - +0.2 1,103,027 - +0.4 1,103,027 - +0.3
Or see this region's nucleotide sequence