Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0092

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0090 and Psest_0091 overlap by 11 nucleotidesPsest_0091 and Psest_0092 are separated by 11 nucleotidesPsest_0092 and Psest_0093 overlap by 4 nucleotidesPsest_0093 and Psest_0094 overlap by 4 nucleotides Psest_0090: Psest_0090 - phosphonate metabolism protein PhnM, at 90,952 to 92,097 _0090 Psest_0091: Psest_0091 - phosphonate C-P lyase system protein PhnL, at 92,087 to 92,791 _0091 Psest_0092: Psest_0092 - phosphonate C-P lyase system protein PhnK, at 92,803 to 93,615 _0092 Psest_0093: Psest_0093 - Uncharacterized enzyme of phosphonate metabolism, at 93,612 to 94,481 _0093 Psest_0094: Psest_0094 - Uncharacterized enzyme of phosphonate metabolism, at 94,478 to 95,587 _0094 Position (kb) 92 93 94Strain fitness (log2 ratio) -3 -2 -1 0 1at 92.080 kb on + strandat 92.080 kb on + strandat 92.080 kb on + strandat 92.081 kb on - strandat 92.081 kb on - strandat 92.503 kb on - strand, within Psest_0091at 92.531 kb on + strand, within Psest_0091at 92.531 kb on + strand, within Psest_0091at 92.532 kb on - strand, within Psest_0091at 92.532 kb on - strand, within Psest_0091at 92.610 kb on + strand, within Psest_0091at 92.610 kb on + strand, within Psest_0091at 92.610 kb on + strand, within Psest_0091at 92.610 kb on + strand, within Psest_0091at 92.610 kb on + strand, within Psest_0091at 92.610 kb on + strand, within Psest_0091at 92.611 kb on - strand, within Psest_0091at 92.611 kb on - strand, within Psest_0091at 92.611 kb on - strand, within Psest_0091at 92.611 kb on - strand, within Psest_0091at 92.620 kb on - strand, within Psest_0091at 92.838 kb on + strandat 92.839 kb on - strandat 92.839 kb on - strandat 92.840 kb on + strandat 93.386 kb on + strand, within Psest_0092at 93.715 kb on + strand, within Psest_0093at 93.715 kb on + strand, within Psest_0093at 93.715 kb on + strand, within Psest_0093at 93.809 kb on - strand, within Psest_0093at 93.809 kb on - strand, within Psest_0093at 93.923 kb on - strand, within Psest_0093at 93.952 kb on + strand, within Psest_0093at 93.953 kb on - strand, within Psest_0093at 94.096 kb on + strand, within Psest_0093at 94.096 kb on + strand, within Psest_0093at 94.096 kb on + strand, within Psest_0093at 94.444 kb on + strandat 94.444 kb on + strandat 94.584 kb on + strandat 94.584 kb on + strandat 94.584 kb on + strandat 94.584 kb on + strandat 94.585 kb on - strandat 94.585 kb on - strandat 94.585 kb on - strandat 94.585 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
92,080 + +0.5
92,080 + -0.2
92,080 + +1.7
92,081 - -1.0
92,081 - -1.1
92,503 - Psest_0091 0.59 -3.1
92,531 + Psest_0091 0.63 -0.2
92,531 + Psest_0091 0.63 -0.1
92,532 - Psest_0091 0.63 -0.8
92,532 - Psest_0091 0.63 -0.5
92,610 + Psest_0091 0.74 -3.3
92,610 + Psest_0091 0.74 -0.2
92,610 + Psest_0091 0.74 +0.4
92,610 + Psest_0091 0.74 +0.2
92,610 + Psest_0091 0.74 -0.6
92,610 + Psest_0091 0.74 +0.1
92,611 - Psest_0091 0.74 +0.1
92,611 - Psest_0091 0.74 +0.2
92,611 - Psest_0091 0.74 -1.4
92,611 - Psest_0091 0.74 -1.0
92,620 - Psest_0091 0.76 -0.8
92,838 + +0.4
92,839 - -0.8
92,839 - -0.5
92,840 + -0.4
93,386 + Psest_0092 0.72 -0.9
93,715 + Psest_0093 0.12 -0.4
93,715 + Psest_0093 0.12 -0.5
93,715 + Psest_0093 0.12 -0.5
93,809 - Psest_0093 0.23 -1.5
93,809 - Psest_0093 0.23 -2.7
93,923 - Psest_0093 0.36 -1.2
93,952 + Psest_0093 0.39 +0.7
93,953 - Psest_0093 0.39 -0.6
94,096 + Psest_0093 0.56 -3.0
94,096 + Psest_0093 0.56 -0.8
94,096 + Psest_0093 0.56 -0.2
94,444 + +0.4
94,444 + -0.1
94,584 + +0.9
94,584 + +0.5
94,584 + +0.0
94,584 + +0.0
94,585 - +0.0
94,585 - -1.5
94,585 - -0.8
94,585 - -0.4

Or see this region's nucleotide sequence