Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0834

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0833 and Psest_0834 are separated by 73 nucleotidesPsest_0834 and Psest_0835 are separated by 192 nucleotides Psest_0833: Psest_0833 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 904,272 to 905,801 _0833 Psest_0834: Psest_0834 - hypothetical protein, at 905,875 to 906,084 _0834 Psest_0835: Psest_0835 - Collagenase and related proteases, at 906,277 to 907,272 _0835 Position (kb) 905 906 907Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 904.993 kb on + strand, within Psest_0833at 904.993 kb on + strand, within Psest_0833at 904.993 kb on + strand, within Psest_0833at 904.993 kb on + strand, within Psest_0833at 904.994 kb on - strand, within Psest_0833at 904.994 kb on - strand, within Psest_0833at 905.171 kb on + strand, within Psest_0833at 905.171 kb on + strand, within Psest_0833at 905.873 kb on + strandat 905.873 kb on + strandat 905.874 kb on - strandat 905.874 kb on - strandat 905.874 kb on - strandat 906.254 kb on + strandat 906.267 kb on - strandat 906.267 kb on - strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.349 kb on + strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.350 kb on - strandat 906.395 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.460 kb on + strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.461 kb on - strand, within Psest_0835at 906.463 kb on - strand, within Psest_0835at 906.474 kb on + strand, within Psest_0835at 906.474 kb on + strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.475 kb on - strand, within Psest_0835at 906.478 kb on + strand, within Psest_0835at 906.479 kb on - strand, within Psest_0835at 906.662 kb on - strand, within Psest_0835at 906.818 kb on - strand, within Psest_0835at 906.818 kb on - strand, within Psest_0835at 906.921 kb on - strand, within Psest_0835

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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904,993 + Psest_0833 0.47 -0.1
904,993 + Psest_0833 0.47 -0.1
904,993 + Psest_0833 0.47 +0.1
904,993 + Psest_0833 0.47 +0.2
904,994 - Psest_0833 0.47 +0.1
904,994 - Psest_0833 0.47 +0.4
905,171 + Psest_0833 0.59 -0.2
905,171 + Psest_0833 0.59 +0.8
905,873 + +0.8
905,873 + -0.3
905,874 - -0.5
905,874 - -1.3
905,874 - -0.5
906,254 + +0.2
906,267 - +0.4
906,267 - -0.2
906,349 + -0.4
906,349 + -2.4
906,349 + -2.8
906,349 + +0.4
906,349 + -1.0
906,349 + -0.9
906,349 + +0.1
906,349 + +0.6
906,349 + +0.5
906,349 + +0.1
906,349 + -0.4
906,350 - +0.1
906,350 - -0.2
906,350 - -0.6
906,350 - +0.4
906,350 - -0.2
906,350 - -0.2
906,350 - +0.4
906,350 - -1.2
906,350 - +2.3
906,350 - +0.3
906,350 - +0.7
906,350 - -0.3
906,350 - +0.4
906,350 - -0.7
906,350 - +0.1
906,395 + Psest_0835 0.12 +1.1
906,460 + Psest_0835 0.18 +0.4
906,460 + Psest_0835 0.18 +0.2
906,460 + Psest_0835 0.18 -0.6
906,460 + Psest_0835 0.18 +0.8
906,460 + Psest_0835 0.18 +0.6
906,460 + Psest_0835 0.18 -0.9
906,460 + Psest_0835 0.18 -1.3
906,460 + Psest_0835 0.18 +0.5
906,460 + Psest_0835 0.18 -0.3
906,460 + Psest_0835 0.18 -0.7
906,460 + Psest_0835 0.18 -0.6
906,460 + Psest_0835 0.18 +0.9
906,460 + Psest_0835 0.18 -0.6
906,460 + Psest_0835 0.18 -0.3
906,460 + Psest_0835 0.18 -0.2
906,460 + Psest_0835 0.18 +0.1
906,460 + Psest_0835 0.18 +0.3
906,461 - Psest_0835 0.18 +1.0
906,461 - Psest_0835 0.18 -0.7
906,461 - Psest_0835 0.18 -0.2
906,461 - Psest_0835 0.18 -0.4
906,461 - Psest_0835 0.18 +1.0
906,461 - Psest_0835 0.18 +1.2
906,461 - Psest_0835 0.18 +1.2
906,461 - Psest_0835 0.18 +0.7
906,461 - Psest_0835 0.18 +0.8
906,461 - Psest_0835 0.18 -0.3
906,461 - Psest_0835 0.18 -0.1
906,461 - Psest_0835 0.18 +0.9
906,461 - Psest_0835 0.18 -0.5
906,461 - Psest_0835 0.18 +0.6
906,461 - Psest_0835 0.18 +0.6
906,461 - Psest_0835 0.18 +0.5
906,461 - Psest_0835 0.18 +0.2
906,461 - Psest_0835 0.18 +0.1
906,461 - Psest_0835 0.18 -2.7
906,461 - Psest_0835 0.18 -0.6
906,461 - Psest_0835 0.18 -0.2
906,461 - Psest_0835 0.18 -1.4
906,461 - Psest_0835 0.18 +0.1
906,461 - Psest_0835 0.18 -0.3
906,461 - Psest_0835 0.18 +0.4
906,461 - Psest_0835 0.18 -0.3
906,461 - Psest_0835 0.18 -0.0
906,463 - Psest_0835 0.19 +0.5
906,474 + Psest_0835 0.20 +0.2
906,474 + Psest_0835 0.20 -1.9
906,475 - Psest_0835 0.20 -1.1
906,475 - Psest_0835 0.20 -0.4
906,475 - Psest_0835 0.20 -1.2
906,475 - Psest_0835 0.20 +0.4
906,475 - Psest_0835 0.20 +0.3
906,475 - Psest_0835 0.20 +0.8
906,478 + Psest_0835 0.20 +0.6
906,479 - Psest_0835 0.20 +0.1
906,662 - Psest_0835 0.39 -0.0
906,818 - Psest_0835 0.54 -0.5
906,818 - Psest_0835 0.54 +2.0
906,921 - Psest_0835 0.65 -0.5

Or see this region's nucleotide sequence