Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0710

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0709 and Psest_0710 overlap by 4 nucleotidesPsest_0710 and Psest_0711 are separated by 166 nucleotides Psest_0709: Psest_0709 - pseudouridine synthase, RluA family, at 778,325 to 779,452 _0709 Psest_0710: Psest_0710 - uncharacterized protein, YfiH family, at 779,449 to 780,186 _0710 Psest_0711: Psest_0711 - ATP-dependent chaperone ClpB, at 780,353 to 782,917 _0711 Position (kb) 779 780 781Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 778.467 kb on + strand, within Psest_0709at 778.467 kb on + strand, within Psest_0709at 778.467 kb on + strand, within Psest_0709at 778.467 kb on + strand, within Psest_0709at 778.468 kb on - strand, within Psest_0709at 778.468 kb on - strand, within Psest_0709at 778.468 kb on - strand, within Psest_0709at 778.477 kb on + strand, within Psest_0709at 778.477 kb on + strand, within Psest_0709at 778.478 kb on - strand, within Psest_0709at 778.629 kb on + strand, within Psest_0709at 778.629 kb on + strand, within Psest_0709at 778.629 kb on + strand, within Psest_0709at 778.629 kb on + strand, within Psest_0709at 778.630 kb on - strand, within Psest_0709at 778.630 kb on - strand, within Psest_0709at 778.630 kb on - strand, within Psest_0709at 778.730 kb on - strand, within Psest_0709at 778.748 kb on + strand, within Psest_0709at 778.748 kb on + strand, within Psest_0709at 778.748 kb on + strand, within Psest_0709at 778.749 kb on - strand, within Psest_0709at 778.825 kb on + strand, within Psest_0709at 778.997 kb on + strand, within Psest_0709at 778.997 kb on + strand, within Psest_0709at 778.997 kb on + strand, within Psest_0709at 778.997 kb on + strand, within Psest_0709at 778.998 kb on - strand, within Psest_0709at 778.998 kb on - strand, within Psest_0709at 778.998 kb on - strand, within Psest_0709at 778.998 kb on - strand, within Psest_0709at 778.998 kb on - strand, within Psest_0709at 778.998 kb on - strand, within Psest_0709at 779.080 kb on + strand, within Psest_0709at 779.080 kb on + strand, within Psest_0709at 779.080 kb on + strand, within Psest_0709at 779.182 kb on + strand, within Psest_0709at 779.183 kb on - strand, within Psest_0709at 779.244 kb on - strand, within Psest_0709at 779.244 kb on - strand, within Psest_0709at 780.282 kb on + strandat 780.282 kb on + strandat 780.282 kb on + strandat 780.282 kb on + strandat 780.282 kb on + strandat 780.282 kb on + strandat 780.282 kb on + strandat 780.282 kb on + strandat 780.282 kb on + strandat 780.282 kb on + strandat 780.282 kb on + strandat 780.282 kb on + strandat 780.282 kb on + strandat 780.282 kb on + strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.283 kb on - strandat 780.302 kb on + strandat 780.302 kb on + strandat 780.302 kb on + strandat 780.302 kb on + strandat 780.302 kb on + strandat 780.303 kb on - strandat 780.334 kb on + strandat 780.665 kb on + strand, within Psest_0711at 780.665 kb on + strand, within Psest_0711at 780.666 kb on - strand, within Psest_0711at 780.666 kb on - strand, within Psest_0711at 780.666 kb on - strand, within Psest_0711at 780.666 kb on - strand, within Psest_0711at 780.709 kb on + strand, within Psest_0711at 780.842 kb on + strand, within Psest_0711at 780.842 kb on + strand, within Psest_0711at 780.842 kb on + strand, within Psest_0711at 780.842 kb on + strand, within Psest_0711at 780.842 kb on + strand, within Psest_0711at 780.842 kb on + strand, within Psest_0711at 780.842 kb on + strand, within Psest_0711at 780.842 kb on + strand, within Psest_0711at 780.842 kb on + strand, within Psest_0711at 780.842 kb on + strand, within Psest_0711at 780.843 kb on - strand, within Psest_0711at 780.843 kb on - strand, within Psest_0711at 780.843 kb on - strand, within Psest_0711

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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778,467 + Psest_0709 0.13 -1.6
778,467 + Psest_0709 0.13 +0.5
778,467 + Psest_0709 0.13 +1.0
778,467 + Psest_0709 0.13 +0.7
778,468 - Psest_0709 0.13 -1.3
778,468 - Psest_0709 0.13 +0.0
778,468 - Psest_0709 0.13 +0.5
778,477 + Psest_0709 0.13 +0.0
778,477 + Psest_0709 0.13 -0.4
778,478 - Psest_0709 0.14 -1.8
778,629 + Psest_0709 0.27 -0.1
778,629 + Psest_0709 0.27 -2.9
778,629 + Psest_0709 0.27 -0.3
778,629 + Psest_0709 0.27 +0.6
778,630 - Psest_0709 0.27 -1.2
778,630 - Psest_0709 0.27 -1.3
778,630 - Psest_0709 0.27 -0.8
778,730 - Psest_0709 0.36 -0.5
778,748 + Psest_0709 0.38 -1.6
778,748 + Psest_0709 0.38 -0.4
778,748 + Psest_0709 0.38 -0.8
778,749 - Psest_0709 0.38 -0.8
778,825 + Psest_0709 0.44 -2.6
778,997 + Psest_0709 0.60 -1.5
778,997 + Psest_0709 0.60 -1.7
778,997 + Psest_0709 0.60 -0.8
778,997 + Psest_0709 0.60 -2.2
778,998 - Psest_0709 0.60 -1.8
778,998 - Psest_0709 0.60 -2.6
778,998 - Psest_0709 0.60 -0.8
778,998 - Psest_0709 0.60 -0.1
778,998 - Psest_0709 0.60 -0.3
778,998 - Psest_0709 0.60 -1.0
779,080 + Psest_0709 0.67 -1.7
779,080 + Psest_0709 0.67 -0.6
779,080 + Psest_0709 0.67 -1.4
779,182 + Psest_0709 0.76 -2.5
779,183 - Psest_0709 0.76 -2.3
779,244 - Psest_0709 0.81 -1.9
779,244 - Psest_0709 0.81 -0.8
780,282 + -1.2
780,282 + -0.5
780,282 + +0.3
780,282 + +0.0
780,282 + +0.6
780,282 + -0.2
780,282 + -2.2
780,282 + +0.6
780,282 + +0.8
780,282 + +0.0
780,282 + +0.8
780,282 + +0.8
780,282 + -0.7
780,282 + +1.0
780,283 - +0.3
780,283 - +0.6
780,283 - +0.4
780,283 - +0.0
780,283 - +0.2
780,283 - +0.5
780,283 - +1.0
780,283 - +0.5
780,283 - +0.2
780,283 - +0.2
780,283 - -0.0
780,283 - -1.9
780,283 - +0.1
780,283 - -0.3
780,283 - -1.5
780,283 - -1.1
780,302 + +1.0
780,302 + +2.0
780,302 + +1.0
780,302 + +0.6
780,302 + +1.7
780,303 - -1.2
780,334 + -0.2
780,665 + Psest_0711 0.12 +0.8
780,665 + Psest_0711 0.12 -0.3
780,666 - Psest_0711 0.12 +0.5
780,666 - Psest_0711 0.12 -0.2
780,666 - Psest_0711 0.12 -0.3
780,666 - Psest_0711 0.12 +0.1
780,709 + Psest_0711 0.14 +0.4
780,842 + Psest_0711 0.19 +0.1
780,842 + Psest_0711 0.19 +0.9
780,842 + Psest_0711 0.19 -1.8
780,842 + Psest_0711 0.19 -1.8
780,842 + Psest_0711 0.19 +0.3
780,842 + Psest_0711 0.19 +0.6
780,842 + Psest_0711 0.19 +0.2
780,842 + Psest_0711 0.19 -0.7
780,842 + Psest_0711 0.19 -0.5
780,842 + Psest_0711 0.19 +0.7
780,843 - Psest_0711 0.19 +0.0
780,843 - Psest_0711 0.19 +0.1
780,843 - Psest_0711 0.19 -1.7

Or see this region's nucleotide sequence