Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0679

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0678 and Psest_0679 overlap by 13 nucleotidesPsest_0679 and Psest_0680 overlap by 4 nucleotides Psest_0678: Psest_0678 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 740,345 to 741,835 _0678 Psest_0679: Psest_0679 - ATPase, YjeE family, at 741,823 to 742,293 _0679 Psest_0680: Psest_0680 - N-acetylmuramoyl-L-alanine amidase, at 742,290 to 743,726 _0680 Position (kb) 741 742 743Strain fitness (log2 ratio) -1 0 1 2at 741.251 kb on + strand, within Psest_0678at 741.533 kb on + strand, within Psest_0678at 741.565 kb on + strand, within Psest_0678at 741.565 kb on + strand, within Psest_0678at 741.841 kb on + strandat 742.289 kb on + strandat 742.289 kb on + strandat 742.289 kb on + strandat 742.295 kb on + strandat 742.295 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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741,251 + Psest_0678 0.61 +0.3
741,533 + Psest_0678 0.80 +2.6
741,565 + Psest_0678 0.82 +0.0
741,565 + Psest_0678 0.82 +0.6
741,841 + -0.2
742,289 + +0.8
742,289 + -1.0
742,289 + -0.7
742,295 + +0.1
742,295 + +1.4

Or see this region's nucleotide sequence