Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0553

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0552 and Psest_0553 are separated by 304 nucleotidesPsest_0553 and Psest_0554 are separated by 0 nucleotides Psest_0552: Psest_0552 - conserved hypothetical protein, proteobacterial, at 605,652 to 606,371 _0552 Psest_0553: Psest_0553 - DnaK suppressor protein, at 606,676 to 606,942 _0553 Psest_0554: Psest_0554 - Signal transduction histidine kinase, at 606,943 to 608,124 _0554 Position (kb) 606 607Strain fitness (log2 ratio) -2 -1 0 1 2at 605.698 kb on + strandat 605.755 kb on + strand, within Psest_0552at 605.755 kb on + strand, within Psest_0552at 605.755 kb on + strand, within Psest_0552at 605.842 kb on + strand, within Psest_0552at 605.842 kb on + strand, within Psest_0552at 605.843 kb on - strand, within Psest_0552at 605.843 kb on - strand, within Psest_0552at 605.872 kb on + strand, within Psest_0552at 605.872 kb on + strand, within Psest_0552at 605.873 kb on - strand, within Psest_0552at 605.925 kb on + strand, within Psest_0552at 605.925 kb on + strand, within Psest_0552at 605.925 kb on + strand, within Psest_0552at 605.926 kb on - strand, within Psest_0552at 605.926 kb on - strand, within Psest_0552at 606.001 kb on + strand, within Psest_0552at 606.001 kb on + strand, within Psest_0552at 606.001 kb on + strand, within Psest_0552at 606.001 kb on + strand, within Psest_0552at 606.001 kb on + strand, within Psest_0552at 606.001 kb on + strand, within Psest_0552at 606.001 kb on + strand, within Psest_0552at 606.002 kb on - strand, within Psest_0552at 606.002 kb on - strand, within Psest_0552at 606.002 kb on - strand, within Psest_0552at 606.002 kb on - strand, within Psest_0552at 606.004 kb on + strand, within Psest_0552at 606.005 kb on - strand, within Psest_0552at 606.005 kb on - strand, within Psest_0552at 606.005 kb on - strand, within Psest_0552at 606.065 kb on - strand, within Psest_0552at 606.106 kb on + strand, within Psest_0552at 606.106 kb on + strand, within Psest_0552at 606.106 kb on + strand, within Psest_0552at 606.106 kb on + strand, within Psest_0552at 606.107 kb on - strand, within Psest_0552at 606.107 kb on - strand, within Psest_0552at 606.107 kb on - strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.169 kb on + strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.170 kb on - strand, within Psest_0552at 606.231 kb on + strand, within Psest_0552at 606.358 kb on + strandat 606.358 kb on + strandat 606.358 kb on + strandat 606.358 kb on + strandat 606.358 kb on + strandat 606.358 kb on + strandat 606.359 kb on - strandat 606.359 kb on - strandat 606.359 kb on - strandat 606.359 kb on - strandat 606.371 kb on + strandat 606.372 kb on - strandat 606.372 kb on - strandat 606.372 kb on - strandat 606.459 kb on + strandat 606.459 kb on + strandat 606.459 kb on + strandat 606.460 kb on - strandat 606.460 kb on - strandat 606.489 kb on - strandat 606.537 kb on - strandat 606.537 kb on - strandat 606.905 kb on - strand, within Psest_0553at 607.011 kb on + strandat 607.097 kb on + strand, within Psest_0554at 607.360 kb on + strand, within Psest_0554at 607.360 kb on + strand, within Psest_0554at 607.360 kb on + strand, within Psest_0554at 607.361 kb on - strand, within Psest_0554at 607.403 kb on - strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.810 kb on - strand, within Psest_0554at 607.810 kb on - strand, within Psest_0554at 607.810 kb on - strand, within Psest_0554at 607.810 kb on - strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.826 kb on + strand, within Psest_0554at 607.826 kb on + strand, within Psest_0554at 607.827 kb on - strand, within Psest_0554at 607.827 kb on - strand, within Psest_0554at 607.827 kb on - strand, within Psest_0554

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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605,698 + +0.2
605,755 + Psest_0552 0.14 -0.8
605,755 + Psest_0552 0.14 -0.9
605,755 + Psest_0552 0.14 +0.1
605,842 + Psest_0552 0.26 +0.0
605,842 + Psest_0552 0.26 -1.0
605,843 - Psest_0552 0.27 +0.5
605,843 - Psest_0552 0.27 -0.2
605,872 + Psest_0552 0.31 -0.8
605,872 + Psest_0552 0.31 +0.4
605,873 - Psest_0552 0.31 +0.3
605,925 + Psest_0552 0.38 +0.4
605,925 + Psest_0552 0.38 +0.7
605,925 + Psest_0552 0.38 +0.3
605,926 - Psest_0552 0.38 -0.2
605,926 - Psest_0552 0.38 +0.5
606,001 + Psest_0552 0.48 +0.5
606,001 + Psest_0552 0.48 +0.1
606,001 + Psest_0552 0.48 +0.9
606,001 + Psest_0552 0.48 +0.4
606,001 + Psest_0552 0.48 +0.3
606,001 + Psest_0552 0.48 +0.1
606,001 + Psest_0552 0.48 -0.2
606,002 - Psest_0552 0.49 -0.0
606,002 - Psest_0552 0.49 -1.4
606,002 - Psest_0552 0.49 -1.2
606,002 - Psest_0552 0.49 -0.7
606,004 + Psest_0552 0.49 +0.7
606,005 - Psest_0552 0.49 +0.9
606,005 - Psest_0552 0.49 +0.3
606,005 - Psest_0552 0.49 +0.3
606,065 - Psest_0552 0.57 -0.9
606,106 + Psest_0552 0.63 -0.8
606,106 + Psest_0552 0.63 +0.7
606,106 + Psest_0552 0.63 +0.3
606,106 + Psest_0552 0.63 +0.7
606,107 - Psest_0552 0.63 -0.9
606,107 - Psest_0552 0.63 +0.7
606,107 - Psest_0552 0.63 -1.0
606,169 + Psest_0552 0.72 +0.1
606,169 + Psest_0552 0.72 +0.1
606,169 + Psest_0552 0.72 +0.5
606,169 + Psest_0552 0.72 +0.1
606,169 + Psest_0552 0.72 +1.9
606,169 + Psest_0552 0.72 -1.3
606,169 + Psest_0552 0.72 -1.8
606,170 - Psest_0552 0.72 +0.3
606,170 - Psest_0552 0.72 +0.2
606,170 - Psest_0552 0.72 +0.5
606,170 - Psest_0552 0.72 -0.2
606,170 - Psest_0552 0.72 -0.3
606,170 - Psest_0552 0.72 -0.6
606,170 - Psest_0552 0.72 +0.0
606,170 - Psest_0552 0.72 +0.8
606,170 - Psest_0552 0.72 +0.2
606,231 + Psest_0552 0.80 -0.9
606,358 + +0.8
606,358 + +2.0
606,358 + -0.3
606,358 + +0.7
606,358 + -0.0
606,358 + +0.1
606,359 - +0.2
606,359 - -0.8
606,359 - +0.5
606,359 - -0.3
606,371 + +0.0
606,372 - -0.1
606,372 - -2.5
606,372 - -1.7
606,459 + -0.8
606,459 + -0.5
606,459 + +0.3
606,460 - -1.9
606,460 - -1.8
606,489 - +0.3
606,537 - -2.3
606,537 - -1.4
606,905 - Psest_0553 0.86 +0.8
607,011 + -0.1
607,097 + Psest_0554 0.13 +0.4
607,360 + Psest_0554 0.35 -1.2
607,360 + Psest_0554 0.35 -0.3
607,360 + Psest_0554 0.35 +0.2
607,361 - Psest_0554 0.35 +0.3
607,403 - Psest_0554 0.39 -0.2
607,809 + Psest_0554 0.73 +0.2
607,809 + Psest_0554 0.73 +1.1
607,809 + Psest_0554 0.73 +1.3
607,809 + Psest_0554 0.73 +0.1
607,809 + Psest_0554 0.73 -1.7
607,809 + Psest_0554 0.73 -2.2
607,809 + Psest_0554 0.73 +0.8
607,809 + Psest_0554 0.73 +0.1
607,810 - Psest_0554 0.73 -0.2
607,810 - Psest_0554 0.73 +0.0
607,810 - Psest_0554 0.73 +0.3
607,810 - Psest_0554 0.73 +0.4
607,811 + Psest_0554 0.73 -0.8
607,811 + Psest_0554 0.73 -0.2
607,811 + Psest_0554 0.73 +1.2
607,811 + Psest_0554 0.73 +0.1
607,811 + Psest_0554 0.73 +0.1
607,811 + Psest_0554 0.73 +0.9
607,811 + Psest_0554 0.73 +0.4
607,811 + Psest_0554 0.73 +1.1
607,811 + Psest_0554 0.73 -0.3
607,811 + Psest_0554 0.73 -0.0
607,811 + Psest_0554 0.73 +1.1
607,811 + Psest_0554 0.73 -2.4
607,811 + Psest_0554 0.73 +1.5
607,811 + Psest_0554 0.73 +0.5
607,811 + Psest_0554 0.73 +0.0
607,811 + Psest_0554 0.73 +0.1
607,812 - Psest_0554 0.74 +1.5
607,812 - Psest_0554 0.74 -1.4
607,812 - Psest_0554 0.74 -1.4
607,812 - Psest_0554 0.74 +0.8
607,812 - Psest_0554 0.74 +0.1
607,812 - Psest_0554 0.74 -0.9
607,812 - Psest_0554 0.74 +1.5
607,826 + Psest_0554 0.75 +0.0
607,826 + Psest_0554 0.75 +0.5
607,827 - Psest_0554 0.75 -0.2
607,827 - Psest_0554 0.75 +2.1
607,827 - Psest_0554 0.75 +1.3

Or see this region's nucleotide sequence