Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0053

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0051 and Psest_0052 are separated by 10 nucleotidesPsest_0052 and Psest_0053 are separated by 167 nucleotidesPsest_0053 and Psest_0054 are separated by 86 nucleotidesPsest_0054 and Psest_0055 are separated by 211 nucleotides Psest_0051: Psest_0051 - hypothetical protein, at 54,187 to 54,516 _0051 Psest_0052: Psest_0052 - hypothetical protein, at 54,527 to 55,279 _0052 Psest_0053: Psest_0053 - hypothetical protein, at 55,447 to 55,950 _0053 Psest_0054: Psest_0054 - hypothetical protein, at 56,037 to 56,429 _0054 Psest_0055: Psest_0055 - hypothetical protein, at 56,641 to 57,462 _0055 Position (kb) 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 54.488 kb on + strandat 54.488 kb on + strandat 54.488 kb on + strandat 54.488 kb on + strandat 54.488 kb on + strandat 54.489 kb on - strandat 54.489 kb on - strandat 54.735 kb on + strand, within Psest_0052at 54.736 kb on - strand, within Psest_0052at 54.736 kb on - strand, within Psest_0052at 54.736 kb on - strand, within Psest_0052at 54.736 kb on - strand, within Psest_0052at 54.736 kb on - strand, within Psest_0052at 54.780 kb on + strand, within Psest_0052at 54.803 kb on + strand, within Psest_0052at 54.825 kb on + strand, within Psest_0052at 54.825 kb on + strand, within Psest_0052at 54.825 kb on + strand, within Psest_0052at 54.831 kb on + strand, within Psest_0052at 54.831 kb on + strand, within Psest_0052at 54.831 kb on + strand, within Psest_0052at 54.831 kb on + strand, within Psest_0052at 54.832 kb on - strand, within Psest_0052at 54.832 kb on - strand, within Psest_0052at 54.832 kb on - strand, within Psest_0052at 54.832 kb on - strand, within Psest_0052at 54.862 kb on - strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 54.999 kb on + strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.000 kb on - strand, within Psest_0052at 55.034 kb on + strand, within Psest_0052at 55.065 kb on + strand, within Psest_0052at 55.065 kb on + strand, within Psest_0052at 55.066 kb on - strand, within Psest_0052at 55.066 kb on - strand, within Psest_0052at 55.168 kb on - strand, within Psest_0052at 55.199 kb on + strand, within Psest_0052at 55.200 kb on - strand, within Psest_0052at 55.200 kb on - strand, within Psest_0052at 55.264 kb on - strandat 55.306 kb on + strandat 55.313 kb on - strandat 55.313 kb on - strandat 55.421 kb on - strandat 55.424 kb on - strandat 55.424 kb on - strandat 55.424 kb on - strandat 55.834 kb on + strand, within Psest_0053at 56.182 kb on + strand, within Psest_0054at 56.183 kb on - strand, within Psest_0054at 56.183 kb on - strand, within Psest_0054at 56.200 kb on + strand, within Psest_0054at 56.201 kb on - strand, within Psest_0054at 56.248 kb on + strand, within Psest_0054at 56.249 kb on - strand, within Psest_0054at 56.249 kb on - strand, within Psest_0054at 56.423 kb on + strandat 56.424 kb on - strandat 56.424 kb on - strandat 56.424 kb on - strandat 56.482 kb on + strandat 56.482 kb on + strandat 56.483 kb on - strandat 56.546 kb on + strandat 56.546 kb on + strandat 56.547 kb on - strandat 56.667 kb on + strandat 56.668 kb on - strandat 56.668 kb on - strandat 56.864 kb on + strand, within Psest_0055at 56.865 kb on - strand, within Psest_0055at 56.865 kb on - strand, within Psest_0055at 56.865 kb on - strand, within Psest_0055

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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54,488 + +0.9
54,488 + +0.1
54,488 + +0.1
54,488 + +0.3
54,488 + -0.5
54,489 - -0.3
54,489 - +1.4
54,735 + Psest_0052 0.28 +1.2
54,736 - Psest_0052 0.28 +0.7
54,736 - Psest_0052 0.28 -0.2
54,736 - Psest_0052 0.28 -0.1
54,736 - Psest_0052 0.28 +0.2
54,736 - Psest_0052 0.28 +0.4
54,780 + Psest_0052 0.34 -0.5
54,803 + Psest_0052 0.37 -1.1
54,825 + Psest_0052 0.40 -0.3
54,825 + Psest_0052 0.40 +0.8
54,825 + Psest_0052 0.40 +0.7
54,831 + Psest_0052 0.40 +0.0
54,831 + Psest_0052 0.40 +0.0
54,831 + Psest_0052 0.40 -0.6
54,831 + Psest_0052 0.40 -0.3
54,832 - Psest_0052 0.41 +1.5
54,832 - Psest_0052 0.41 +0.7
54,832 - Psest_0052 0.41 +1.7
54,832 - Psest_0052 0.41 -0.7
54,862 - Psest_0052 0.44 +0.8
54,999 + Psest_0052 0.63 +0.6
54,999 + Psest_0052 0.63 -2.0
54,999 + Psest_0052 0.63 -0.4
54,999 + Psest_0052 0.63 -0.7
54,999 + Psest_0052 0.63 +0.3
54,999 + Psest_0052 0.63 +0.5
54,999 + Psest_0052 0.63 +0.2
54,999 + Psest_0052 0.63 +0.7
54,999 + Psest_0052 0.63 -0.8
54,999 + Psest_0052 0.63 +0.2
55,000 - Psest_0052 0.63 +0.8
55,000 - Psest_0052 0.63 -0.1
55,000 - Psest_0052 0.63 -1.0
55,000 - Psest_0052 0.63 +0.1
55,000 - Psest_0052 0.63 -0.3
55,000 - Psest_0052 0.63 +0.9
55,000 - Psest_0052 0.63 +0.3
55,000 - Psest_0052 0.63 +0.9
55,000 - Psest_0052 0.63 -0.6
55,000 - Psest_0052 0.63 +0.0
55,034 + Psest_0052 0.67 -0.5
55,065 + Psest_0052 0.71 -0.1
55,065 + Psest_0052 0.71 +0.4
55,066 - Psest_0052 0.72 +0.8
55,066 - Psest_0052 0.72 -0.6
55,168 - Psest_0052 0.85 +0.0
55,199 + Psest_0052 0.89 +1.0
55,200 - Psest_0052 0.89 -0.2
55,200 - Psest_0052 0.89 -0.1
55,264 - -1.8
55,306 + -2.0
55,313 - +1.6
55,313 - -0.3
55,421 - -0.1
55,424 - -1.4
55,424 - -0.1
55,424 - -0.0
55,834 + Psest_0053 0.77 -0.3
56,182 + Psest_0054 0.37 -0.4
56,183 - Psest_0054 0.37 +1.2
56,183 - Psest_0054 0.37 -0.1
56,200 + Psest_0054 0.41 +0.2
56,201 - Psest_0054 0.42 +0.9
56,248 + Psest_0054 0.54 -0.4
56,249 - Psest_0054 0.54 +1.9
56,249 - Psest_0054 0.54 +0.2
56,423 + +0.7
56,424 - -0.4
56,424 - -0.1
56,424 - +0.5
56,482 + +0.2
56,482 + -0.2
56,483 - +0.1
56,546 + -1.7
56,546 + -0.5
56,547 - +0.4
56,667 + -1.1
56,668 - -0.9
56,668 - +0.0
56,864 + Psest_0055 0.27 -2.6
56,865 - Psest_0055 0.27 +0.7
56,865 - Psest_0055 0.27 +0.6
56,865 - Psest_0055 0.27 -0.5

Or see this region's nucleotide sequence