Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0530

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0528 and Psest_0529 are separated by 117 nucleotidesPsest_0529 and Psest_0530 are separated by 9 nucleotidesPsest_0530 and Psest_0531 overlap by 8 nucleotides Psest_0528: Psest_0528 - apolipoprotein N-acyltransferase, at 581,203 to 582,717 _0528 Psest_0529: Psest_0529 - Putative Mg2+ and Co2+ transporter CorC, at 582,835 to 583,677 _0529 Psest_0530: Psest_0530 - metalloprotein, YbeY/UPF0054 family, at 583,687 to 584,169 _0530 Psest_0531: Psest_0531 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 584,162 to 585,328 _0531 Position (kb) 583 584 585Strain fitness (log2 ratio) -2 -1 0 1 2at 582.735 kb on + strandat 582.735 kb on + strandat 582.735 kb on + strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.821 kb on + strandat 582.821 kb on + strandat 582.836 kb on + strandat 582.837 kb on - strandat 582.896 kb on - strandat 583.017 kb on - strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.489 kb on + strand, within Psest_0529at 583.489 kb on + strand, within Psest_0529at 583.490 kb on - strand, within Psest_0529at 583.490 kb on - strand, within Psest_0529at 583.586 kb on - strand, within Psest_0529at 583.586 kb on - strand, within Psest_0529at 583.730 kb on + strandat 583.730 kb on + strandat 583.730 kb on + strandat 583.730 kb on + strandat 583.730 kb on + strandat 583.730 kb on + strandat 584.230 kb on - strandat 584.267 kb on + strandat 584.267 kb on + strandat 584.267 kb on + strandat 584.268 kb on - strandat 584.268 kb on - strandat 584.318 kb on + strand, within Psest_0531at 584.319 kb on - strand, within Psest_0531at 584.506 kb on - strand, within Psest_0531at 584.506 kb on - strand, within Psest_0531at 584.506 kb on - strand, within Psest_0531at 584.506 kb on - strand, within Psest_0531at 584.557 kb on - strand, within Psest_0531at 584.557 kb on - strand, within Psest_0531at 584.557 kb on - strand, within Psest_0531at 584.590 kb on - strand, within Psest_0531at 584.590 kb on - strand, within Psest_0531at 584.590 kb on - strand, within Psest_0531at 584.676 kb on - strand, within Psest_0531at 584.676 kb on - strand, within Psest_0531at 584.693 kb on + strand, within Psest_0531at 584.694 kb on - strand, within Psest_0531at 584.717 kb on + strand, within Psest_0531at 584.717 kb on + strand, within Psest_0531at 584.718 kb on - strand, within Psest_0531at 584.740 kb on - strand, within Psest_0531at 584.740 kb on - strand, within Psest_0531at 584.806 kb on - strand, within Psest_0531at 584.806 kb on - strand, within Psest_0531at 584.806 kb on - strand, within Psest_0531at 584.917 kb on - strand, within Psest_0531at 584.917 kb on - strand, within Psest_0531at 585.156 kb on - strand, within Psest_0531at 585.156 kb on - strand, within Psest_0531at 585.156 kb on - strand, within Psest_0531

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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582,735 + +0.3
582,735 + +0.8
582,735 + -1.2
582,736 - +1.2
582,736 - -1.7
582,736 - -0.9
582,736 - -0.3
582,736 - -1.2
582,736 - +0.1
582,736 - -1.0
582,736 - -0.8
582,821 + +0.1
582,821 + +0.1
582,836 + -1.9
582,837 - -0.8
582,896 - -1.4
583,017 - Psest_0529 0.22 -0.5
583,085 + Psest_0529 0.30 -0.6
583,085 + Psest_0529 0.30 -0.8
583,085 + Psest_0529 0.30 -0.2
583,085 + Psest_0529 0.30 +0.0
583,085 + Psest_0529 0.30 +0.2
583,085 + Psest_0529 0.30 -0.4
583,085 + Psest_0529 0.30 +0.2
583,085 + Psest_0529 0.30 +0.1
583,085 + Psest_0529 0.30 -0.6
583,085 + Psest_0529 0.30 -0.0
583,085 + Psest_0529 0.30 +0.4
583,085 + Psest_0529 0.30 -0.2
583,085 + Psest_0529 0.30 +1.3
583,085 + Psest_0529 0.30 -0.9
583,085 + Psest_0529 0.30 -0.1
583,086 - Psest_0529 0.30 -0.4
583,086 - Psest_0529 0.30 -0.1
583,086 - Psest_0529 0.30 -1.3
583,086 - Psest_0529 0.30 -0.9
583,086 - Psest_0529 0.30 +0.1
583,086 - Psest_0529 0.30 -0.1
583,086 - Psest_0529 0.30 +0.1
583,086 - Psest_0529 0.30 -0.4
583,086 - Psest_0529 0.30 -0.7
583,086 - Psest_0529 0.30 +0.6
583,086 - Psest_0529 0.30 -1.2
583,489 + Psest_0529 0.78 -0.4
583,489 + Psest_0529 0.78 -0.9
583,490 - Psest_0529 0.78 +0.8
583,490 - Psest_0529 0.78 -0.9
583,586 - Psest_0529 0.89 -0.5
583,586 - Psest_0529 0.89 -0.4
583,730 + -0.3
583,730 + +0.1
583,730 + +0.2
583,730 + +0.5
583,730 + -0.2
583,730 + -1.0
584,230 - -1.4
584,267 + -0.7
584,267 + -1.4
584,267 + +1.2
584,268 - -0.1
584,268 - -1.5
584,318 + Psest_0531 0.13 +0.3
584,319 - Psest_0531 0.13 -0.1
584,506 - Psest_0531 0.29 +0.8
584,506 - Psest_0531 0.29 +0.1
584,506 - Psest_0531 0.29 -0.8
584,506 - Psest_0531 0.29 -0.6
584,557 - Psest_0531 0.34 +1.2
584,557 - Psest_0531 0.34 +0.6
584,557 - Psest_0531 0.34 -0.1
584,590 - Psest_0531 0.37 -0.6
584,590 - Psest_0531 0.37 +0.5
584,590 - Psest_0531 0.37 +0.2
584,676 - Psest_0531 0.44 +0.1
584,676 - Psest_0531 0.44 -0.1
584,693 + Psest_0531 0.46 -1.5
584,694 - Psest_0531 0.46 +1.8
584,717 + Psest_0531 0.48 -0.7
584,717 + Psest_0531 0.48 -0.9
584,718 - Psest_0531 0.48 -0.7
584,740 - Psest_0531 0.50 +0.2
584,740 - Psest_0531 0.50 -0.1
584,806 - Psest_0531 0.55 +0.2
584,806 - Psest_0531 0.55 -0.4
584,806 - Psest_0531 0.55 -0.2
584,917 - Psest_0531 0.65 +0.2
584,917 - Psest_0531 0.65 -0.3
585,156 - Psest_0531 0.85 -0.4
585,156 - Psest_0531 0.85 -1.1
585,156 - Psest_0531 0.85 -0.4

Or see this region's nucleotide sequence