Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0528

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0526 and Psest_0527 are separated by 66 nucleotidesPsest_0527 and Psest_0528 are separated by 100 nucleotidesPsest_0528 and Psest_0529 are separated by 117 nucleotidesPsest_0529 and Psest_0530 are separated by 9 nucleotides Psest_0526: Psest_0526 - hypothetical protein, at 579,813 to 580,262 _0526 Psest_0527: Psest_0527 - Uncharacterized conserved protein, at 580,329 to 581,102 _0527 Psest_0528: Psest_0528 - apolipoprotein N-acyltransferase, at 581,203 to 582,717 _0528 Psest_0529: Psest_0529 - Putative Mg2+ and Co2+ transporter CorC, at 582,835 to 583,677 _0529 Psest_0530: Psest_0530 - metalloprotein, YbeY/UPF0054 family, at 583,687 to 584,169 _0530 Position (kb) 581 582 583Strain fitness (log2 ratio) -3 -2 -1 0 1at 580.244 kb on + strandat 580.244 kb on + strandat 580.245 kb on - strandat 580.245 kb on - strandat 580.245 kb on - strandat 580.341 kb on + strandat 580.342 kb on - strandat 580.492 kb on + strand, within Psest_0527at 580.493 kb on - strand, within Psest_0527at 580.493 kb on - strand, within Psest_0527at 580.493 kb on - strand, within Psest_0527at 580.638 kb on + strand, within Psest_0527at 580.638 kb on + strand, within Psest_0527at 580.639 kb on - strand, within Psest_0527at 580.723 kb on - strand, within Psest_0527at 580.762 kb on + strand, within Psest_0527at 580.762 kb on + strand, within Psest_0527at 580.762 kb on + strand, within Psest_0527at 580.762 kb on + strand, within Psest_0527at 580.763 kb on - strand, within Psest_0527at 580.763 kb on - strand, within Psest_0527at 580.763 kb on - strand, within Psest_0527at 580.763 kb on - strand, within Psest_0527at 580.836 kb on + strand, within Psest_0527at 580.836 kb on + strand, within Psest_0527at 580.836 kb on + strand, within Psest_0527at 580.836 kb on + strand, within Psest_0527at 580.836 kb on + strand, within Psest_0527at 580.836 kb on + strand, within Psest_0527at 580.836 kb on + strand, within Psest_0527at 580.836 kb on + strand, within Psest_0527at 580.836 kb on + strand, within Psest_0527at 580.837 kb on - strand, within Psest_0527at 580.837 kb on - strand, within Psest_0527at 580.837 kb on - strand, within Psest_0527at 580.837 kb on - strand, within Psest_0527at 580.837 kb on - strand, within Psest_0527at 580.837 kb on - strand, within Psest_0527at 580.902 kb on - strand, within Psest_0527at 580.902 kb on - strand, within Psest_0527at 581.082 kb on + strandat 581.083 kb on - strandat 582.735 kb on + strandat 582.735 kb on + strandat 582.735 kb on + strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.736 kb on - strandat 582.821 kb on + strandat 582.821 kb on + strandat 582.836 kb on + strandat 582.837 kb on - strandat 582.896 kb on - strandat 583.017 kb on - strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.085 kb on + strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.086 kb on - strand, within Psest_0529at 583.489 kb on + strand, within Psest_0529at 583.489 kb on + strand, within Psest_0529at 583.490 kb on - strand, within Psest_0529at 583.490 kb on - strand, within Psest_0529at 583.586 kb on - strand, within Psest_0529at 583.586 kb on - strand, within Psest_0529

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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580,244 + -0.1
580,244 + -1.0
580,245 - -3.6
580,245 - -0.5
580,245 - -1.3
580,341 + -0.5
580,342 - -2.3
580,492 + Psest_0527 0.21 +0.1
580,493 - Psest_0527 0.21 +0.2
580,493 - Psest_0527 0.21 -0.1
580,493 - Psest_0527 0.21 +1.4
580,638 + Psest_0527 0.40 +0.5
580,638 + Psest_0527 0.40 -0.4
580,639 - Psest_0527 0.40 +0.4
580,723 - Psest_0527 0.51 -0.1
580,762 + Psest_0527 0.56 +1.2
580,762 + Psest_0527 0.56 +1.2
580,762 + Psest_0527 0.56 +1.2
580,762 + Psest_0527 0.56 -1.0
580,763 - Psest_0527 0.56 +0.5
580,763 - Psest_0527 0.56 -1.1
580,763 - Psest_0527 0.56 -0.1
580,763 - Psest_0527 0.56 +0.2
580,836 + Psest_0527 0.66 -1.6
580,836 + Psest_0527 0.66 +0.3
580,836 + Psest_0527 0.66 -0.6
580,836 + Psest_0527 0.66 -0.3
580,836 + Psest_0527 0.66 +0.5
580,836 + Psest_0527 0.66 +0.5
580,836 + Psest_0527 0.66 +0.2
580,836 + Psest_0527 0.66 -0.1
580,836 + Psest_0527 0.66 +1.3
580,837 - Psest_0527 0.66 -1.6
580,837 - Psest_0527 0.66 +0.6
580,837 - Psest_0527 0.66 -0.7
580,837 - Psest_0527 0.66 +0.9
580,837 - Psest_0527 0.66 -0.5
580,837 - Psest_0527 0.66 -2.4
580,902 - Psest_0527 0.74 -0.2
580,902 - Psest_0527 0.74 -2.0
581,082 + -0.1
581,083 - -0.7
582,735 + +0.3
582,735 + +0.8
582,735 + -1.2
582,736 - +1.2
582,736 - -1.7
582,736 - -0.9
582,736 - -0.3
582,736 - -1.2
582,736 - +0.1
582,736 - -1.0
582,736 - -0.8
582,821 + +0.1
582,821 + +0.1
582,836 + -1.9
582,837 - -0.8
582,896 - -1.4
583,017 - Psest_0529 0.22 -0.5
583,085 + Psest_0529 0.30 -0.6
583,085 + Psest_0529 0.30 -0.8
583,085 + Psest_0529 0.30 -0.2
583,085 + Psest_0529 0.30 +0.0
583,085 + Psest_0529 0.30 +0.2
583,085 + Psest_0529 0.30 -0.4
583,085 + Psest_0529 0.30 +0.2
583,085 + Psest_0529 0.30 +0.1
583,085 + Psest_0529 0.30 -0.6
583,085 + Psest_0529 0.30 -0.0
583,085 + Psest_0529 0.30 +0.4
583,085 + Psest_0529 0.30 -0.2
583,085 + Psest_0529 0.30 +1.3
583,085 + Psest_0529 0.30 -0.9
583,085 + Psest_0529 0.30 -0.1
583,086 - Psest_0529 0.30 -0.4
583,086 - Psest_0529 0.30 -0.1
583,086 - Psest_0529 0.30 -1.3
583,086 - Psest_0529 0.30 -0.9
583,086 - Psest_0529 0.30 +0.1
583,086 - Psest_0529 0.30 -0.1
583,086 - Psest_0529 0.30 +0.1
583,086 - Psest_0529 0.30 -0.4
583,086 - Psest_0529 0.30 -0.7
583,086 - Psest_0529 0.30 +0.6
583,086 - Psest_0529 0.30 -1.2
583,489 + Psest_0529 0.78 -0.4
583,489 + Psest_0529 0.78 -0.9
583,490 - Psest_0529 0.78 +0.8
583,490 - Psest_0529 0.78 -0.9
583,586 - Psest_0529 0.89 -0.5
583,586 - Psest_0529 0.89 -0.4

Or see this region's nucleotide sequence