Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0005

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0004 and Psest_0005 overlap by 4 nucleotidesPsest_0005 and Psest_0006 are separated by 225 nucleotides Psest_0004: Psest_0004 - recF protein, at 3,260 to 4,372 _0004 Psest_0005: Psest_0005 - DNA gyrase, B subunit, at 4,369 to 6,783 _0005 Psest_0006: Psest_0006 - alkyl hydroperoxide reductase, F subunit, at 7,009 to 8,571 _0006 Position (kb) 4 5 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1at 3.446 kb on + strand, within Psest_0004at 3.446 kb on + strand, within Psest_0004at 3.447 kb on - strand, within Psest_0004at 3.447 kb on - strand, within Psest_0004at 3.447 kb on - strand, within Psest_0004at 3.447 kb on - strand, within Psest_0004at 3.447 kb on - strand, within Psest_0004at 3.447 kb on - strand, within Psest_0004at 3.540 kb on + strand, within Psest_0004at 3.540 kb on + strand, within Psest_0004at 3.540 kb on + strand, within Psest_0004at 3.541 kb on - strand, within Psest_0004at 3.541 kb on - strand, within Psest_0004at 3.541 kb on - strand, within Psest_0004at 3.613 kb on + strand, within Psest_0004at 3.622 kb on + strand, within Psest_0004at 3.622 kb on + strand, within Psest_0004at 3.622 kb on + strand, within Psest_0004at 3.766 kb on + strand, within Psest_0004at 3.766 kb on + strand, within Psest_0004at 3.848 kb on + strand, within Psest_0004at 3.848 kb on + strand, within Psest_0004at 3.848 kb on + strand, within Psest_0004at 3.848 kb on + strand, within Psest_0004at 3.848 kb on + strand, within Psest_0004at 3.848 kb on + strand, within Psest_0004at 3.848 kb on + strand, within Psest_0004at 3.848 kb on + strand, within Psest_0004at 3.849 kb on - strand, within Psest_0004at 3.923 kb on + strand, within Psest_0004at 3.923 kb on + strand, within Psest_0004at 3.923 kb on + strand, within Psest_0004at 4.004 kb on - strand, within Psest_0004at 4.107 kb on + strand, within Psest_0004at 4.107 kb on + strand, within Psest_0004at 4.107 kb on + strand, within Psest_0004at 4.111 kb on + strand, within Psest_0004at 4.111 kb on + strand, within Psest_0004at 4.111 kb on + strand, within Psest_0004at 4.111 kb on + strand, within Psest_0004at 4.111 kb on + strand, within Psest_0004at 4.112 kb on - strand, within Psest_0004at 4.160 kb on + strand, within Psest_0004at 4.160 kb on + strand, within Psest_0004at 4.260 kb on + strand, within Psest_0004at 6.800 kb on - strandat 6.800 kb on - strandat 6.815 kb on - strandat 6.919 kb on - strandat 6.934 kb on + strandat 6.934 kb on + strandat 6.934 kb on + strandat 6.935 kb on - strandat 7.529 kb on - strand, within Psest_0006at 7.529 kb on - strand, within Psest_0006at 7.529 kb on - strand, within Psest_0006at 7.693 kb on + strand, within Psest_0006at 7.694 kb on - strand, within Psest_0006

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,446 + Psest_0004 0.17 -1.9
3,446 + Psest_0004 0.17 -0.8
3,447 - Psest_0004 0.17 +0.7
3,447 - Psest_0004 0.17 +0.8
3,447 - Psest_0004 0.17 +0.3
3,447 - Psest_0004 0.17 +0.2
3,447 - Psest_0004 0.17 -0.1
3,447 - Psest_0004 0.17 -1.1
3,540 + Psest_0004 0.25 +0.8
3,540 + Psest_0004 0.25 -0.3
3,540 + Psest_0004 0.25 -0.8
3,541 - Psest_0004 0.25 +1.6
3,541 - Psest_0004 0.25 -0.4
3,541 - Psest_0004 0.25 +0.9
3,613 + Psest_0004 0.32 -0.4
3,622 + Psest_0004 0.33 -0.2
3,622 + Psest_0004 0.33 -1.9
3,622 + Psest_0004 0.33 -1.0
3,766 + Psest_0004 0.45 -0.3
3,766 + Psest_0004 0.45 +0.6
3,848 + Psest_0004 0.53 +0.3
3,848 + Psest_0004 0.53 +1.0
3,848 + Psest_0004 0.53 -2.3
3,848 + Psest_0004 0.53 -0.6
3,848 + Psest_0004 0.53 -0.1
3,848 + Psest_0004 0.53 -0.4
3,848 + Psest_0004 0.53 -0.6
3,848 + Psest_0004 0.53 +0.6
3,849 - Psest_0004 0.53 +0.5
3,923 + Psest_0004 0.60 +0.2
3,923 + Psest_0004 0.60 -1.9
3,923 + Psest_0004 0.60 +0.4
4,004 - Psest_0004 0.67 -0.1
4,107 + Psest_0004 0.76 +0.0
4,107 + Psest_0004 0.76 -0.0
4,107 + Psest_0004 0.76 +0.0
4,111 + Psest_0004 0.76 -0.2
4,111 + Psest_0004 0.76 +1.3
4,111 + Psest_0004 0.76 +0.4
4,111 + Psest_0004 0.76 -3.1
4,111 + Psest_0004 0.76 -0.4
4,112 - Psest_0004 0.77 -0.8
4,160 + Psest_0004 0.81 +0.9
4,160 + Psest_0004 0.81 -0.8
4,260 + Psest_0004 0.90 -1.3
6,800 - -1.2
6,800 - +1.0
6,815 - +0.5
6,919 - -0.2
6,934 + -0.7
6,934 + -1.5
6,934 + +0.9
6,935 - -0.3
7,529 - Psest_0006 0.33 +0.1
7,529 - Psest_0006 0.33 +0.7
7,529 - Psest_0006 0.33 +0.7
7,693 + Psest_0006 0.44 +1.2
7,694 - Psest_0006 0.44 -1.3

Or see this region's nucleotide sequence