Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4001 and Psest_4002 are separated by 129 nucleotides Psest_4002 and Psest_4003 are separated by 38 nucleotides Psest_4003 and Psest_4004 are separated by 113 nucleotides
Psest_4001: Psest_4001 - acetylornithine deacetylase (ArgE), at 4,172,943 to 4,174,103
_4001
Psest_4002: Psest_4002 - Phosphate/sulphate permeases, at 4,174,233 to 4,175,498
_4002
Psest_4003: Psest_4003 - TIGR00153 family protein, at 4,175,537 to 4,176,214
_4003
Psest_4004: Psest_4004 - Uncharacterized conserved protein, at 4,176,328 to 4,177,692
_4004
Position (kb) 4174
4175
4176 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4173.359 kb on + strand, within Psest_4001 at 4173.359 kb on + strand, within Psest_4001 at 4173.359 kb on + strand, within Psest_4001 at 4173.360 kb on - strand, within Psest_4001 at 4173.360 kb on - strand, within Psest_4001 at 4173.360 kb on - strand, within Psest_4001 at 4173.414 kb on + strand, within Psest_4001 at 4173.415 kb on - strand, within Psest_4001 at 4173.437 kb on - strand, within Psest_4001 at 4173.558 kb on - strand, within Psest_4001 at 4173.913 kb on + strand, within Psest_4001 at 4174.109 kb on - strand at 4174.109 kb on - strand at 4174.109 kb on - strand at 4174.127 kb on + strand at 4174.215 kb on + strand at 4174.215 kb on + strand at 4174.215 kb on + strand at 4174.215 kb on + strand at 4174.216 kb on - strand at 4174.942 kb on + strand, within Psest_4002 at 4175.506 kb on - strand at 4175.506 kb on - strand at 4175.506 kb on - strand at 4175.506 kb on - strand at 4175.506 kb on - strand at 4175.620 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.845 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4175.943 kb on - strand, within Psest_4003 at 4176.152 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.249 kb on - strand at 4176.250 kb on + strand at 4176.250 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.309 kb on + strand at 4176.310 kb on - strand at 4176.353 kb on + strand at 4176.353 kb on + strand at 4176.451 kb on + strand at 4176.451 kb on + strand at 4176.452 kb on - strand at 4176.452 kb on - strand at 4176.454 kb on + strand at 4176.455 kb on - strand at 4176.455 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,173,359 + Psest_4001 0.36 +0.1 4,173,359 + Psest_4001 0.36 -0.9 4,173,359 + Psest_4001 0.36 -1.0 4,173,360 - Psest_4001 0.36 +0.4 4,173,360 - Psest_4001 0.36 -0.0 4,173,360 - Psest_4001 0.36 +0.5 4,173,414 + Psest_4001 0.41 +1.5 4,173,415 - Psest_4001 0.41 -0.4 4,173,437 - Psest_4001 0.43 +0.9 4,173,558 - Psest_4001 0.53 -0.4 4,173,913 + Psest_4001 0.84 +1.0 4,174,109 - +0.2 4,174,109 - -0.4 4,174,109 - +0.2 4,174,127 + -0.7 4,174,215 + -1.6 4,174,215 + -0.7 4,174,215 + -0.1 4,174,215 + -0.2 4,174,216 - -0.5 4,174,942 + Psest_4002 0.56 -3.0 4,175,506 - -1.5 4,175,506 - -1.4 4,175,506 - -1.7 4,175,506 - -0.4 4,175,506 - -2.4 4,175,620 - Psest_4003 0.12 +0.8 4,175,845 - Psest_4003 0.45 -1.5 4,175,845 - Psest_4003 0.45 -1.6 4,175,845 - Psest_4003 0.45 -2.5 4,175,845 - Psest_4003 0.45 -2.8 4,175,845 - Psest_4003 0.45 -2.1 4,175,845 - Psest_4003 0.45 -3.3 4,175,943 - Psest_4003 0.60 -2.6 4,175,943 - Psest_4003 0.60 -2.2 4,175,943 - Psest_4003 0.60 -2.1 4,175,943 - Psest_4003 0.60 -1.7 4,175,943 - Psest_4003 0.60 -1.5 4,176,152 - -3.3 4,176,249 - -0.4 4,176,249 - -1.2 4,176,249 - +0.2 4,176,249 - -0.7 4,176,249 - -1.9 4,176,249 - +0.4 4,176,249 - +0.0 4,176,249 - -0.6 4,176,249 - -0.3 4,176,250 + -1.5 4,176,250 + -0.3 4,176,309 + -0.4 4,176,309 + -1.6 4,176,309 + -1.1 4,176,309 + +0.8 4,176,309 + +0.3 4,176,309 + +0.3 4,176,309 + -1.4 4,176,310 - -0.2 4,176,353 + -0.1 4,176,353 + -0.3 4,176,451 + -1.1 4,176,451 + +0.1 4,176,452 - -1.0 4,176,452 - -1.1 4,176,454 + -0.2 4,176,455 - -0.4 4,176,455 - -2.0
Or see this region's nucleotide sequence