Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3712 and Psest_3713 are separated by 10 nucleotides Psest_3713 and Psest_3714 are separated by 23 nucleotides Psest_3714 and Psest_3715 overlap by 4 nucleotides
Psest_3712: Psest_3712 - Type II secretory pathway, component ExeA (predicted ATPase), at 3,879,640 to 3,881,181
_3712
Psest_3713: Psest_3713 - 3-dehydroquinate synthase, at 3,881,192 to 3,882,295
_3713
Psest_3714: Psest_3714 - Shikimate kinase, at 3,882,319 to 3,882,873
_3714
Psest_3715: Psest_3715 - type IV pilus secretin (or competence protein) PilQ, at 3,882,870 to 3,884,951
_3715
Position (kb)
3881
3882
3883 Strain fitness (log2 ratio)
-2
-1
0
1 at 3880.196 kb on - strand, within Psest_3712 at 3880.299 kb on + strand, within Psest_3712 at 3880.401 kb on + strand, within Psest_3712 at 3880.592 kb on + strand, within Psest_3712 at 3880.592 kb on + strand, within Psest_3712 at 3880.592 kb on + strand, within Psest_3712 at 3880.593 kb on - strand, within Psest_3712 at 3880.616 kb on + strand, within Psest_3712 at 3880.617 kb on - strand, within Psest_3712 at 3880.617 kb on - strand, within Psest_3712 at 3880.705 kb on + strand, within Psest_3712 at 3880.705 kb on + strand, within Psest_3712 at 3880.705 kb on + strand, within Psest_3712 at 3880.705 kb on + strand, within Psest_3712 at 3880.705 kb on + strand, within Psest_3712 at 3880.706 kb on - strand, within Psest_3712 at 3880.706 kb on - strand, within Psest_3712 at 3880.706 kb on - strand, within Psest_3712 at 3880.706 kb on - strand, within Psest_3712 at 3880.706 kb on - strand, within Psest_3712 at 3880.706 kb on - strand, within Psest_3712 at 3880.706 kb on - strand, within Psest_3712 at 3880.799 kb on + strand, within Psest_3712 at 3880.799 kb on + strand, within Psest_3712 at 3881.029 kb on + strand at 3881.029 kb on + strand at 3881.193 kb on + strand at 3881.193 kb on + strand at 3881.193 kb on + strand at 3881.194 kb on - strand at 3881.194 kb on - strand at 3881.194 kb on - strand at 3881.224 kb on - strand at 3881.224 kb on - strand at 3881.247 kb on - strand at 3882.311 kb on - strand at 3882.311 kb on - strand at 3882.980 kb on - strand at 3882.980 kb on - strand at 3883.032 kb on - strand at 3883.101 kb on - strand, within Psest_3715 at 3883.101 kb on - strand, within Psest_3715 at 3883.109 kb on + strand, within Psest_3715 at 3883.109 kb on + strand, within Psest_3715 at 3883.110 kb on - strand, within Psest_3715 at 3883.110 kb on - strand, within Psest_3715 at 3883.110 kb on - strand, within Psest_3715 at 3883.110 kb on - strand, within Psest_3715 at 3883.235 kb on + strand, within Psest_3715 at 3883.235 kb on + strand, within Psest_3715 at 3883.235 kb on + strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.244 kb on + strand, within Psest_3715 at 3883.244 kb on + strand, within Psest_3715 at 3883.244 kb on + strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 3,880,196 - Psest_3712 0.36 -1.1 3,880,299 + Psest_3712 0.43 +0.9 3,880,401 + Psest_3712 0.49 +1.0 3,880,592 + Psest_3712 0.62 +0.4 3,880,592 + Psest_3712 0.62 -0.6 3,880,592 + Psest_3712 0.62 -0.4 3,880,593 - Psest_3712 0.62 -0.2 3,880,616 + Psest_3712 0.63 +0.1 3,880,617 - Psest_3712 0.63 -0.9 3,880,617 - Psest_3712 0.63 -0.3 3,880,705 + Psest_3712 0.69 -0.2 3,880,705 + Psest_3712 0.69 -0.5 3,880,705 + Psest_3712 0.69 +0.1 3,880,705 + Psest_3712 0.69 -1.4 3,880,705 + Psest_3712 0.69 -0.7 3,880,706 - Psest_3712 0.69 +0.5 3,880,706 - Psest_3712 0.69 -1.3 3,880,706 - Psest_3712 0.69 -0.1 3,880,706 - Psest_3712 0.69 -1.4 3,880,706 - Psest_3712 0.69 +0.7 3,880,706 - Psest_3712 0.69 -0.3 3,880,706 - Psest_3712 0.69 +0.1 3,880,799 + Psest_3712 0.75 -0.6 3,880,799 + Psest_3712 0.75 -0.6 3,881,029 + -0.3 3,881,029 + +0.6 3,881,193 + +0.4 3,881,193 + -0.7 3,881,193 + -0.7 3,881,194 - +1.3 3,881,194 - +1.0 3,881,194 - -1.2 3,881,224 - +0.4 3,881,224 - +0.4 3,881,247 - +0.3 3,882,311 - -0.5 3,882,311 - +0.8 3,882,980 - -1.1 3,882,980 - -2.5 3,883,032 - -1.2 3,883,101 - Psest_3715 0.11 +1.0 3,883,101 - Psest_3715 0.11 -0.1 3,883,109 + Psest_3715 0.11 -2.1 3,883,109 + Psest_3715 0.11 -0.9 3,883,110 - Psest_3715 0.12 -0.3 3,883,110 - Psest_3715 0.12 -1.4 3,883,110 - Psest_3715 0.12 -0.2 3,883,110 - Psest_3715 0.12 -0.8 3,883,235 + Psest_3715 0.18 -1.9 3,883,235 + Psest_3715 0.18 -0.6 3,883,235 + Psest_3715 0.18 -1.0 3,883,236 - Psest_3715 0.18 -0.4 3,883,236 - Psest_3715 0.18 -1.2 3,883,236 - Psest_3715 0.18 -1.7 3,883,236 - Psest_3715 0.18 -1.9 3,883,236 - Psest_3715 0.18 -1.4 3,883,244 + Psest_3715 0.18 -0.7 3,883,244 + Psest_3715 0.18 -1.6 3,883,244 + Psest_3715 0.18 +0.3 3,883,245 - Psest_3715 0.18 -0.6 3,883,245 - Psest_3715 0.18 -0.2 3,883,245 - Psest_3715 0.18 -2.4 3,883,245 - Psest_3715 0.18 -2.3 3,883,245 - Psest_3715 0.18 -1.0
Or see this region's nucleotide sequence