Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3713

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3712 and Psest_3713 are separated by 10 nucleotidesPsest_3713 and Psest_3714 are separated by 23 nucleotidesPsest_3714 and Psest_3715 overlap by 4 nucleotides Psest_3712: Psest_3712 - Type II secretory pathway, component ExeA (predicted ATPase), at 3,879,640 to 3,881,181 _3712 Psest_3713: Psest_3713 - 3-dehydroquinate synthase, at 3,881,192 to 3,882,295 _3713 Psest_3714: Psest_3714 - Shikimate kinase, at 3,882,319 to 3,882,873 _3714 Psest_3715: Psest_3715 - type IV pilus secretin (or competence protein) PilQ, at 3,882,870 to 3,884,951 _3715 Position (kb) 3881 3882 3883Strain fitness (log2 ratio) -2 -1 0 1at 3880.196 kb on - strand, within Psest_3712at 3880.299 kb on + strand, within Psest_3712at 3880.401 kb on + strand, within Psest_3712at 3880.592 kb on + strand, within Psest_3712at 3880.592 kb on + strand, within Psest_3712at 3880.592 kb on + strand, within Psest_3712at 3880.593 kb on - strand, within Psest_3712at 3880.616 kb on + strand, within Psest_3712at 3880.617 kb on - strand, within Psest_3712at 3880.617 kb on - strand, within Psest_3712at 3880.705 kb on + strand, within Psest_3712at 3880.705 kb on + strand, within Psest_3712at 3880.705 kb on + strand, within Psest_3712at 3880.705 kb on + strand, within Psest_3712at 3880.705 kb on + strand, within Psest_3712at 3880.706 kb on - strand, within Psest_3712at 3880.706 kb on - strand, within Psest_3712at 3880.706 kb on - strand, within Psest_3712at 3880.706 kb on - strand, within Psest_3712at 3880.706 kb on - strand, within Psest_3712at 3880.706 kb on - strand, within Psest_3712at 3880.706 kb on - strand, within Psest_3712at 3880.799 kb on + strand, within Psest_3712at 3880.799 kb on + strand, within Psest_3712at 3881.029 kb on + strandat 3881.029 kb on + strandat 3881.193 kb on + strandat 3881.193 kb on + strandat 3881.193 kb on + strandat 3881.194 kb on - strandat 3881.194 kb on - strandat 3881.194 kb on - strandat 3881.224 kb on - strandat 3881.224 kb on - strandat 3881.247 kb on - strandat 3882.311 kb on - strandat 3882.311 kb on - strandat 3882.980 kb on - strandat 3882.980 kb on - strandat 3883.032 kb on - strandat 3883.101 kb on - strand, within Psest_3715at 3883.101 kb on - strand, within Psest_3715at 3883.109 kb on + strand, within Psest_3715at 3883.109 kb on + strand, within Psest_3715at 3883.110 kb on - strand, within Psest_3715at 3883.110 kb on - strand, within Psest_3715at 3883.110 kb on - strand, within Psest_3715at 3883.110 kb on - strand, within Psest_3715at 3883.235 kb on + strand, within Psest_3715at 3883.235 kb on + strand, within Psest_3715at 3883.235 kb on + strand, within Psest_3715at 3883.236 kb on - strand, within Psest_3715at 3883.236 kb on - strand, within Psest_3715at 3883.236 kb on - strand, within Psest_3715at 3883.236 kb on - strand, within Psest_3715at 3883.236 kb on - strand, within Psest_3715at 3883.244 kb on + strand, within Psest_3715at 3883.244 kb on + strand, within Psest_3715at 3883.244 kb on + strand, within Psest_3715at 3883.245 kb on - strand, within Psest_3715at 3883.245 kb on - strand, within Psest_3715at 3883.245 kb on - strand, within Psest_3715at 3883.245 kb on - strand, within Psest_3715at 3883.245 kb on - strand, within Psest_3715

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,880,196 - Psest_3712 0.36 -1.1
3,880,299 + Psest_3712 0.43 +0.9
3,880,401 + Psest_3712 0.49 +1.0
3,880,592 + Psest_3712 0.62 +0.4
3,880,592 + Psest_3712 0.62 -0.6
3,880,592 + Psest_3712 0.62 -0.4
3,880,593 - Psest_3712 0.62 -0.2
3,880,616 + Psest_3712 0.63 +0.1
3,880,617 - Psest_3712 0.63 -0.9
3,880,617 - Psest_3712 0.63 -0.3
3,880,705 + Psest_3712 0.69 -0.2
3,880,705 + Psest_3712 0.69 -0.5
3,880,705 + Psest_3712 0.69 +0.1
3,880,705 + Psest_3712 0.69 -1.4
3,880,705 + Psest_3712 0.69 -0.7
3,880,706 - Psest_3712 0.69 +0.5
3,880,706 - Psest_3712 0.69 -1.3
3,880,706 - Psest_3712 0.69 -0.1
3,880,706 - Psest_3712 0.69 -1.4
3,880,706 - Psest_3712 0.69 +0.7
3,880,706 - Psest_3712 0.69 -0.3
3,880,706 - Psest_3712 0.69 +0.1
3,880,799 + Psest_3712 0.75 -0.6
3,880,799 + Psest_3712 0.75 -0.6
3,881,029 + -0.3
3,881,029 + +0.6
3,881,193 + +0.4
3,881,193 + -0.7
3,881,193 + -0.7
3,881,194 - +1.3
3,881,194 - +1.0
3,881,194 - -1.2
3,881,224 - +0.4
3,881,224 - +0.4
3,881,247 - +0.3
3,882,311 - -0.5
3,882,311 - +0.8
3,882,980 - -1.1
3,882,980 - -2.5
3,883,032 - -1.2
3,883,101 - Psest_3715 0.11 +1.0
3,883,101 - Psest_3715 0.11 -0.1
3,883,109 + Psest_3715 0.11 -2.1
3,883,109 + Psest_3715 0.11 -0.9
3,883,110 - Psest_3715 0.12 -0.3
3,883,110 - Psest_3715 0.12 -1.4
3,883,110 - Psest_3715 0.12 -0.2
3,883,110 - Psest_3715 0.12 -0.8
3,883,235 + Psest_3715 0.18 -1.9
3,883,235 + Psest_3715 0.18 -0.6
3,883,235 + Psest_3715 0.18 -1.0
3,883,236 - Psest_3715 0.18 -0.4
3,883,236 - Psest_3715 0.18 -1.2
3,883,236 - Psest_3715 0.18 -1.7
3,883,236 - Psest_3715 0.18 -1.9
3,883,236 - Psest_3715 0.18 -1.4
3,883,244 + Psest_3715 0.18 -0.7
3,883,244 + Psest_3715 0.18 -1.6
3,883,244 + Psest_3715 0.18 +0.3
3,883,245 - Psest_3715 0.18 -0.6
3,883,245 - Psest_3715 0.18 -0.2
3,883,245 - Psest_3715 0.18 -2.4
3,883,245 - Psest_3715 0.18 -2.3
3,883,245 - Psest_3715 0.18 -1.0

Or see this region's nucleotide sequence